Information for 12-GTCAGMTTTACAG (Motif 11)

A T C G A C G T T G A C G C T A T C A G T G A C G C A T A C G T G A C T T G C A A G T C C G T A A C T G
Reverse Opposite:
T G A C A C G T A C T G A C G T C T G A C G T A C G T A A C T G A G T C C G A T A C T G G T C A T A G C
p-value:1e-9
log p-value:-2.173e+01
Information Content per bp:1.631
Number of Target Sequences with motif37.0
Percentage of Target Sequences with motif4.79%
Number of Background Sequences with motif687.8
Percentage of Background Sequences with motif1.43%
Average Position of motif in Targets52.8 +/- 24.9bp
Average Position of motif in Background53.0 +/- 28.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:1
Score:0.65
Offset:6
Orientation:reverse strand
Alignment:GTCAGMTTTACAG---
------TTMACACCTT
 A T C G A C G T T G A C G C T A T C A G T G A C G C A T A C G T G A C T T G C A A G T C C G T A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C A G T G A C T G T A C C T G A A T G C T C G A T A G C G T A C G A C T G A C T

MEIS2/MA0774.1/Jaspar

Match Rank:2
Score:0.64
Offset:6
Orientation:forward strand
Alignment:GTCAGMTTTACAG-
------TTGACAGC
 A T C G A C G T T G A C G C T A T C A G T G A C G C A T A C G T G A C T T G C A A G T C C G T A A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:3
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:GTCAGMTTTACAG-
--BTVATTWGCATA
 A T C G A C G T T G A C G C T A T C A G T G A C G C A T A C G T G A C T T G C A A G T C C G T A A C T G A C G T
A C G T A C G T A G T C C A G T T G C A G T C A A C G T A G C T C G A T T C A G G T A C C G T A A C G T C T G A

PH0158.1_Rhox11_2/Jaspar

Match Rank:4
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:GTCAGMTTTACAG------
--TCNCTTTACAGCGNNNT
 A T C G A C G T T G A C G C T A T C A G T G A C G C A T A C G T G A C T T G C A A G T C C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G A T A G T C A T G C G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G G A T C C T A G C A G T G T A C A G T C C G A T

Rhox11/MA0629.1/Jaspar

Match Rank:5
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:GTCAGMTTTACAG------
--TCNNTTTACAGCGNNNT
 A T C G A C G T T G A C G C T A T C A G T G A C G C A T A C G T G A C T T G C A A G T C C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G A T A G T C A T C G G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G A G T C C T A G A C G T G T A C A C G T G C A T

PH0157.1_Rhox11_1/Jaspar

Match Rank:6
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:GTCAGMTTTACAG------
--TCNNTTTACAGCGNNNT
 A T C G A C G T T G A C G C T A T C A G T G A C G C A T A C G T G A C T T G C A A G T C C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G A T A G T C A T C G G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G A G T C C T A G A C G T G T A C A C G T G C A T

POL009.1_DCE_S_II/Jaspar

Match Rank:7
Score:0.61
Offset:8
Orientation:reverse strand
Alignment:GTCAGMTTTACAG-
--------CACAGN
 A T C G A C G T T G A C G C T A T C A G T G A C G C A T A C G T G A C T T G C A A G T C C G T A A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:8
Score:0.61
Offset:4
Orientation:forward strand
Alignment:GTCAGMTTTACAG-
----HTTTCCCASG
 A T C G A C G T T G A C G C T A T C A G T G A C G C A T A C G T G A C T T G C A A G T C C G T A A C T G A C G T
A C G T A C G T A C G T A C G T G A C T C A G T A G C T C G A T A G T C G A T C A G T C C G T A A T G C T C A G

MEIS3/MA0775.1/Jaspar

Match Rank:9
Score:0.61
Offset:6
Orientation:forward strand
Alignment:GTCAGMTTTACAG-
------TTGACAGG
 A T C G A C G T T G A C G C T A T C A G T G A C G C A T A C G T G A C T T G C A A G T C C G T A A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T G C A T A T C G C T G A G A T C C T G A A C T G A T C G

PH0141.1_Pknox2/Jaspar

Match Rank:10
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:GTCAGMTTTACAG------
---NNATTGACAGGTGCTT
 A T C G A C G T T G A C G C T A T C A G T G A C G C A T A C G T G A C T T G C A A G T C C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T C G A C A G T C G T A C A G T A G C T C T A G C G T A A G T C C T G A C A T G A T C G A G C T T A C G A G T C G A C T C G A T