Information for 3-AAAGGTGGCA (Motif 2)

G C T A G C T A C T G A A C T G T C A G C G A T A C T G A C T G A G T C C T G A
Reverse Opposite:
A G C T C T A G A G T C A G T C C G T A A G T C G T A C A G C T C G A T C G A T
p-value:1e-17
log p-value:-4.104e+01
Information Content per bp:1.831
Number of Target Sequences with motif39.0
Percentage of Target Sequences with motif4.86%
Number of Background Sequences with motif378.3
Percentage of Background Sequences with motif0.80%
Average Position of motif in Targets48.5 +/- 22.9bp
Average Position of motif in Background51.3 +/- 30.2bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:1
Score:0.77
Offset:2
Orientation:forward strand
Alignment:AAAGGTGGCA
--AGGTGTCA
 G C T A G C T A C T G A A C T G T C A G C G A T A C T G A C T G A G T C C T G A
A C G T A C G T C T G A C T A G A T C G A G C T A C T G G A C T A G T C C T G A

Hic1/MA0739.1/Jaspar

Match Rank:2
Score:0.75
Offset:2
Orientation:reverse strand
Alignment:AAAGGTGGCA-
--GGTTGGCAT
 G C T A G C T A C T G A A C T G T C A G C G A T A C T G A C T G A G T C C T G A A C G T
A C G T A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T

PB0029.1_Hic1_1/Jaspar

Match Rank:3
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--AAAGGTGGCA----
NGTAGGTTGGCATNNN
 A C G T A C G T G C T A G C T A C T G A A C T G T C A G C G A T A C T G A C T G A G T C C T G A A C G T A C G T A C G T A C G T
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

TBX5/MA0807.1/Jaspar

Match Rank:4
Score:0.68
Offset:2
Orientation:forward strand
Alignment:AAAGGTGGCA
--AGGTGTGA
 G C T A G C T A C T G A A C T G T C A G C G A T A C T G A C T G A G T C C T G A
A C G T A C G T C T G A T C A G A C T G A C G T C T A G A G C T A C T G C T G A

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:5
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:AAAGGTGGCA
--ARNTGACA
 G C T A G C T A C T G A A C T G T C A G C G A T A C T G A C T G A G T C C T G A
A C G T A C G T T G C A C T A G G A T C A C G T C T A G C G T A G T A C T C G A

Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer

Match Rank:6
Score:0.67
Offset:2
Orientation:forward strand
Alignment:AAAGGTGGCA--
--AGGTGTGAAM
 G C T A G C T A C T G A A C T G T C A G C G A T A C T G A C T G A G T C C T G A A C G T A C G T
A C G T A C G T C G T A C T A G C A T G A G C T A C T G C G A T A T C G C G T A G T C A G T C A

PH0164.1_Six4/Jaspar

Match Rank:7
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--AAAGGTGGCA-----
TNNNNGGTGTCATNTNT
 A C G T A C G T G C T A G C T A C T G A A C T G T C A G C G A T A C T G A C T G A G T C C T G A A C G T A C G T A C G T A C G T A C G T
A G C T T C A G T C G A C A G T C T G A T C A G A C T G A C G T C T A G A C G T G T A C C T G A C G A T C A G T G A C T G T C A C A G T

TBX4/MA0806.1/Jaspar

Match Rank:8
Score:0.67
Offset:2
Orientation:forward strand
Alignment:AAAGGTGGCA
--AGGTGTGA
 G C T A G C T A C T G A A C T G T C A G C G A T A C T G A C T G A G T C C T G A
A C G T A C G T C T G A T C A G T A C G A G C T A C T G G A C T A C T G C T G A

TBX2/MA0688.1/Jaspar

Match Rank:9
Score:0.66
Offset:1
Orientation:forward strand
Alignment:AAAGGTGGCA--
-AAGGTGTGAAA
 G C T A G C T A C T G A A C T G T C A G C G A T A C T G A C T G A G T C C T G A A C G T A C G T
A C G T C G T A C T G A T C A G A T C G A G C T C T A G G A C T A C T G C T G A C G T A C G T A

PKNOX2/MA0783.1/Jaspar

Match Rank:10
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--AAAGGTGGCA
TGACAGGTGTCA
 A C G T A C G T G C T A G C T A C T G A A C T G T C A G C G A T A C T G A C T G A G T C C T G A
C G A T T A C G C T G A A G T C C G T A C A T G T A C G A G C T T C A G G A C T T G A C C T G A