Information for 23-GGCAGYCAGG (Motif 26)

C A T G A C T G A T G C G C T A A C T G A G C T A G T C C G T A C T A G C T A G
Reverse Opposite:
A G T C A G T C G C A T A C T G T C G A T G A C C G A T A T C G A G T C G T A C
p-value:1e-10
log p-value:-2.465e+01
Information Content per bp:1.698
Number of Target Sequences with motif63.0
Percentage of Target Sequences with motif7.62%
Number of Background Sequences with motif131.5
Percentage of Background Sequences with motif2.96%
Average Position of motif in Targets51.0 +/- 28.8bp
Average Position of motif in Background55.5 +/- 28.3bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:1
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:GGCAGYCAGG------
-SCAGYCADGCATGAC
 C A T G A C T G A T G C G C T A A C T G A G C T A G T C C G T A C T A G C T A G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:2
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GGCAGYCAGG
AGCCACTCAAG
 A C G T C A T G A C T G A T G C G C T A A C T G A G C T A G T C C G T A C T A G C T A G
C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G

MEIS2/MA0774.1/Jaspar

Match Rank:3
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:GGCAGYCAGG
-GCTGTCAA-
 C A T G A C T G A T G C G C T A A C T G A G C T A G T C C G T A C T A G C T A G
A C G T A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:GGCAGYCAGG
-CCAGACAG-
 C A T G A C T G A T G C G C T A A C T G A G C T A G T C C G T A C T A G C T A G
A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GGCAGYCAGG-------
-GCAGCCAAGCGTGACN
 C A T G A C T G A T G C G C T A A C T G A G C T A G T C C G T A C T A G C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:6
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:GGCAGYCAGG
-BCAGACWA-
 C A T G A C T G A T G C G C T A A C T G A G C T A G T C C G T A C T A G C T A G
A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:7
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GGCAGYCAGG
VGCTGWCAVB
 C A T G A C T G A T G C G C T A A C T G A G C T A G T C C G T A C T A G C T A G
T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:8
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---GGCAGYCAGG
SCTGTCAVTCAV-
 A C G T A C G T A C G T C A T G A C T G A T G C G C T A A C T G A G C T A G T C C G T A C T A G C T A G
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A A C G T

PAX5/MA0014.2/Jaspar

Match Rank:9
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---GGCAGYCAGG------
GAGGGCAGCCAAGCGTGAC
 A C G T A C G T A C G T C A T G A C T G A T G C G C T A A C T G A G C T A G T C C G T A C T A G C T A G A C G T A C G T A C G T A C G T A C G T A C G T
T C A G C G T A T C A G C T A G A C T G G A T C C T G A T A C G A G T C T A G C T C G A C T G A A T C G A G T C C T A G C A G T C T A G C T G A G T A C

ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer

Match Rank:10
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:GGCAGYCAGG-----
RGSMTBCTGGGAAAT
 C A T G A C T G A T G C G C T A A C T G A G C T A G T C C G T A C T A G C T A G A C G T A C G T A C G T A C G T A C G T
C T A G A C T G T A G C G T C A A G C T A G C T T G A C G A C T A C T G A C T G A C T G C G T A T C G A C G T A A C G T