Information for 4-AYHKCCCTCTGCT (Motif 2)

C G T A A G C T G A C T C A G T A G T C G A T C G T A C A C G T A G T C A C G T A T C G A G T C A G C T
Reverse Opposite:
C T G A C T A G A T G C C G T A A C T G C G T A A C T G C A T G T A C G G T C A C T G A T C G A A C G T
p-value:1e-39
log p-value:-9.077e+01
Information Content per bp:1.752
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif2.78%
Number of Background Sequences with motif0.9
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets50.0 +/- 19.1bp
Average Position of motif in Background45.3 +/- 18.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:1
Score:0.68
Offset:3
Orientation:forward strand
Alignment:AYHKCCCTCTGCT
---GCCATCTGTT
 C G T A A G C T G A C T C A G T A G T C G A T C G T A C A C G T A G T C A C G T A T C G A G T C A G C T
A C G T A C G T A C G T T C A G T G A C G T A C C G T A A C G T T G A C A C G T T C A G A G C T G A C T

NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer

Match Rank:2
Score:0.67
Offset:3
Orientation:forward strand
Alignment:AYHKCCCTCTGCT
---ACCATCTGTT
 C G T A A G C T G A C T C A G T A G T C G A T C G T A C A C G T A G T C A C G T A T C G A G T C A G C T
A C G T A C G T A C G T T C G A T G A C G T A C C G T A C A G T T G A C A C G T A C T G A G C T A G C T

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----AYHKCCCTCTGCT---
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T A C G T A C G T C G T A A G C T G A C T C A G T A G T C G A T C G T A C A C G T A G T C A C G T A T C G A G T C A G C T A C G T A C G T A C G T
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

CTCF/MA0139.1/Jaspar

Match Rank:4
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-AYHKCCCTCTGCT-----
TAGCGCCCCCTGGTGGCCA
 A C G T C G T A A G C T G A C T C A G T A G T C G A T C G T A C A C G T A G T C A C G T A T C G A G T C A G C T A C G T A C G T A C G T A C G T A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:5
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--AYHKCCCTCTGCT-----
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T C G T A A G C T G A C T C A G T A G T C G A T C G T A C A C G T A G T C A C G T A T C G A G T C A G C T A C G T A C G T A C G T A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer

Match Rank:6
Score:0.61
Offset:3
Orientation:forward strand
Alignment:AYHKCCCTCTGCT
---RCCATMTGTT
 C G T A A G C T G A C T C A G T A G T C G A T C G T A C A C G T A G T C A C G T A T C G A G T C A G C T
A C G T A C G T A C G T C T G A T G A C T G A C C G T A A C G T T G A C A G C T C T A G A C G T G A C T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:AYHKCCCTCTGCT---
----CCCCCTGCTGTG
 C G T A A G C T G A C T C A G T A G T C G A T C G T A C A C G T A G T C A C G T A T C G A G T C A G C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.58
Offset:2
Orientation:forward strand
Alignment:AYHKCCCTCTGCT
--VBSYGTCTGG-
 C G T A A G C T G A C T C A G T A G T C G A T C G T A C A C G T A G T C A C G T A T C G A G T C A G C T
A C G T A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:9
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:AYHKCCCTCTGCT----
--TGACCTTTGCCCTAN
 C G T A A G C T G A C T C A G T A G T C G A T C G T A C A C G T A G T C A C G T A T C G A G T C A G C T A C G T A C G T A C G T A C G T
A C G T A C G T C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G A T C G A C T T C G A T A G C

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:10
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:AYHKCCCTCTGCT---
--TGACCTTTGCCCTA
 C G T A A G C T G A C T C A G T A G T C G A T C G T A C A C G T A G T C A C G T A T C G A G T C A G C T A C G T A C G T A C G T
A C G T A C G T A G C T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G T G A C G A T C G A T C G A C T T C G A