Information for 11-AGCAGACAACTCC (Motif 10)

C T G A C T A G A T G C G C T A A T C G C G T A A T G C G T C A T C G A A G T C A C G T A T G C G A T C
Reverse Opposite:
C T A G A T C G G T C A C T A G A G C T A C G T A T C G G A C T T A G C C A G T A T C G A G T C G A C T
p-value:1e-17
log p-value:-4.042e+01
Information Content per bp:1.648
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.45%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets49.7 +/- 22.8bp
Average Position of motif in Background62.4 +/- 7.1bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0208.1_Zscan4_2/Jaspar

Match Rank:1
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---AGCAGACAACTCC
CGAAGCACACAAAATA
 A C G T A C G T A C G T C T G A C T A G A T G C G C T A A T C G C G T A A T G C G T C A T C G A A G T C A C G T A T G C G A T C
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:2
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:AGCAGACAACTCC
-BCAGACWA----
 C T G A C T A G A T G C G C T A A T C G C G T A A T G C G T C A T C G A A G T C A C G T A T G C G A T C
A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:AGCAGACAACTCC
-CCAGACRSVB--
 C T G A C T A G A T G C G C T A A T C G C G T A A T G C G T C A T C G A A G T C A C G T A T G C G A T C
A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:AGCAGACAACTCC
-CCAGACAG----
 C T G A C T A G A T G C G C T A A T C G C G T A A T G C G T C A T C G A A G T C A C G T A T G C G A T C
A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:5
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-AGCAGACAACTCC
CAGCC---------
 A C G T C T G A C T A G A T G C G C T A A T C G C G T A A T G C G T C A T C G A A G T C A C G T A T G C G A T C
T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0117.1_Eomes_2/Jaspar

Match Rank:6
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-AGCAGACAACTCC--
NNGGCGACACCTCNNN
 A C G T C T G A C T A G A T G C G C T A A T C G C G T A A T G C G T C A T C G A A G T C A C G T A T G C G A T C A C G T A C G T
A T C G T C G A T C A G A T C G T G A C C T A G G C T A A G T C C T G A A T G C A G T C G A C T G A T C A G T C T A C G A G T C

PB0130.1_Gm397_2/Jaspar

Match Rank:7
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---AGCAGACAACTCC
AGCGGCACACACGCAA
 A C G T A C G T A C G T C T G A C T A G A T G C G C T A A T C G C G T A A T G C G T C A T C G A A G T C A C G T A T G C G A T C
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A

PH0170.1_Tgif2/Jaspar

Match Rank:8
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----AGCAGACAACTCC
AACTAGCTGTCAATAC-
 A C G T A C G T A C G T A C G T C T G A C T A G A T G C G C T A A T C G C G T A A T G C G T C A T C G A A G T C A C G T A T G C G A T C
G C T A C G T A A T G C A G C T C T G A A T C G G T A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T T G C A T A G C A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:9
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----AGCAGACAACTCC
CAAATCCAGACATCACA
 A C G T A C G T A C G T A C G T C T G A C T A G A T G C G C T A A T C G C G T A A T G C G T C A T C G A A G T C A C G T A T G C G A T C
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer

Match Rank:10
Score:0.53
Offset:0
Orientation:forward strand
Alignment:AGCAGACAACTCC
AGGAAACAGCTG-
 C T G A C T A G A T G C G C T A A T C G C G T A A T G C G T C A T C G A A G T C A C G T A T G C G A T C
T C G A A C T G A C T G C G T A C G T A T C G A A G T C C T G A A T C G G T A C G C A T C A T G A C G T