Information for 4-CCCTCCTGTGTTCANA (Motif 6)

A T G C A G T C A G T C A C G T A G T C A G T C A C G T A T C G A C G T A C T G C A G T G A C T A G T C G C T A G T A C C G T A
Reverse Opposite:
G A C T A C T G C A G T A C T G C T G A G T C A A G T C C G T A A T G C C G T A A C T G C T A G C G T A C T A G C T A G A T C G
p-value:1e-9
log p-value:-2.117e+01
Information Content per bp:1.756
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.71%
Number of Background Sequences with motif5.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets44.0 +/- 21.9bp
Average Position of motif in Background49.2 +/- 18.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--CCCTCCTGTGTTCANA
CCCCCTGCTGTG------
 A C G T A C G T A T G C A G T C A G T C A C G T A G T C A G T C A C G T A T C G A C G T A C T G C A G T G A C T A G T C G C T A G T A C C G T A
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T A C G T A C G T A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:2
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--CCCTCCTGTGTTCANA
NNTCCTGCTGTGNNN---
 A C G T A C G T A T G C A G T C A G T C A C G T A G T C A G T C A C G T A T C G A C G T A C T G C A G T G A C T A G T C G C T A G T A C C G T A
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C A C G T A C G T A C G T

Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:CCCTCCTGTGTTCANA
ACTTCCTGTT------
 A T G C A G T C A G T C A C G T A G T C A G T C A C G T A T C G A C G T A C T G C A G T G A C T A G T C G C T A G T A C C G T A
T C G A A G T C C G A T C G A T A G T C A G T C A C G T T A C G G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:4
Score:0.64
Offset:4
Orientation:forward strand
Alignment:CCCTCCTGTGTTCANA
----GCTGTG------
 A T G C A G T C A G T C A C G T A G T C A G T C A C G T A T C G A C G T A C T G C A G T G A C T A G T C G C T A G T A C C G T A
A C G T A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:5
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--CCCTCCTGTGTTCANA
TNTCCTGCTGTGNNG---
 A C G T A C G T A T G C A G T C A G T C A C G T A G T C A G T C A C G T A T C G A C G T A C T G C A G T G A C T A G T C G C T A G T A C C G T A
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:6
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----CCCTCCTGTGTTCANA
GGCCYCCTGCTGDGH-----
 A C G T A C G T A C G T A C G T A T G C A G T C A G T C A C G T A G T C A G T C A C G T A T C G A C G T A C T G C A G T G A C T A G T C G C T A G T A C C G T A
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T A C G T A C G T A C G T A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:7
Score:0.62
Offset:4
Orientation:forward strand
Alignment:CCCTCCTGTGTTCANA
----YCTTTGTTCC--
 A T G C A G T C A G T C A C G T A G T C A G T C A C G T A T C G A C G T A C T G C A G T G A C T A G T C G C T A G T A C C G T A
A C G T A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C A C G T A C G T

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:8
Score:0.62
Offset:4
Orientation:forward strand
Alignment:CCCTCCTGTGTTCANA
----GCTGTGGTTT--
 A T G C A G T C A G T C A C G T A G T C A G T C A C G T A T C G A C G T A C T G C A G T G A C T A G T C G C T A G T A C C G T A
A C G T A C G T A C G T A C G T A C T G G A T C G A C T A C T G A C G T C A T G A C T G A C G T A G C T C G A T A C G T A C G T

RUNX1/MA0002.2/Jaspar

Match Rank:9
Score:0.62
Offset:3
Orientation:forward strand
Alignment:CCCTCCTGTGTTCANA
---GTCTGTGGTTT--
 A T G C A G T C A G T C A C G T A G T C A G T C A C G T A T C G A C G T A C T G C A G T G A C T A G T C G C T A G T A C C G T A
A C G T A C G T A C G T A C T G A G C T A G T C C G A T A T C G G A C T A C T G A C T G A G C T G A C T C G A T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:10
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CCCTCCTGTGTTCANA
TCNCCTGCTGNGNNN---
 A C G T A C G T A T G C A G T C A G T C A C G T A G T C A G T C A C G T A T C G A C G T A C T G C A G T G A C T A G T C G C T A G T A C C G T A
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G A C G T A C G T A C G T