Information for 12-TGCCATGCTCAGG (Motif 9)

A C G T A C T G A G T C A G T C C G T A A C G T A T C G A G T C A C G T A T G C G T C A A C T G A C T G
Reverse Opposite:
G T A C G T A C A C G T A T C G C G T A C T A G A T G C C G T A C G A T A C T G A C T G G T A C C G T A
p-value:1e-9
log p-value:-2.285e+01
Information Content per bp:1.816
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.59%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets57.4 +/- 15.5bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1/MA0095.2/Jaspar

Match Rank:1
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--TGCCATGCTCAGG
GCNGCCATCTTG---
 A C G T A C G T A C G T A C T G A G T C A G T C C G T A A C G T A T C G A G T C A C G T A T G C G T C A A C T G A C T G
C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G A C G T A C G T A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:2
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----TGCCATGCTCAGG
ACTATGCCAACCTACC-
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C A G T C C G T A A C G T A T C G A G T C A C G T A T G C G T C A A C T G A C T G
C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C A C G T

Hic1/MA0739.1/Jaspar

Match Rank:3
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-TGCCATGCTCAGG
ATGCCAACC-----
 A C G T A C G T A C T G A G T C A G T C C G T A A C G T A T C G A G T C A C G T A T G C G T C A A C T G A C T G
T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C A C G T A C G T A C G T A C G T A C G T

YY1(Zf)/Promoter/Homer

Match Rank:4
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--TGCCATGCTCAGG
GCCGCCATCTTG---
 A C G T A C G T A C G T A C T G A G T C A G T C C G T A A C G T A T C G A G T C A C G T A T G C G T C A A C T G A C T G
C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-TGCCATGCTCAGG
TTGCCAAG------
 A C G T A C G T A C T G A G T C A G T C C G T A A C G T A T C G A G T C A C G T A T G C G T C A A C T G A C T G
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T

HIC2/MA0738.1/Jaspar

Match Rank:6
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-TGCCATGCTCAGG
ATGCCCACC-----
 A C G T A C G T A C T G A G T C A G T C C G T A A C G T A T C G A G T C A C G T A T G C G T C A A C T G A C T G
T C G A A G C T T C A G T G A C G T A C G T A C T C G A T A G C A G T C A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:7
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--TGCCATGCTCAGG
CGTGCCAAG------
 A C G T A C G T A C G T A C T G A G T C A G T C C G T A A C G T A T C G A G T C A C G T A T G C G T C A A C T G A C T G
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T

NFATC1/MA0624.1/Jaspar

Match Rank:8
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---TGCCATGCTCAGG
ATTTTCCATT------
 A C G T A C G T A C G T A C G T A C T G A G T C A G T C C G T A A C G T A T C G A G T C A C G T A T G C G T C A A C T G A C T G
C G T A G C A T C G A T G A C T G A C T T G A C G A T C C T G A G A C T G C A T A C G T A C G T A C G T A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:9
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--TGCCATGCTCAGG
GGTGCCAAGT-----
 A C G T A C G T A C G T A C T G A G T C A G T C C G T A A C G T A T C G A G T C A C G T A T G C G T C A A C T G A C T G
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:10
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:TGCCATGCTCAGG
TGCCAA-------
 A C G T A C T G A G T C A G T C C G T A A C G T A T C G A G T C A C G T A T G C G T C A A C T G A C T G
G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T