Information for 5-GTTTATTAGG (Motif 11)

A C T G A C G T A C G T C G A T C G T A C G A T A C G T C G T A C T A G A C T G
Reverse Opposite:
A G T C G A T C A C G T C G T A C G T A A C G T C G T A C G T A C G T A G T A C
p-value:1e-10
log p-value:-2.334e+01
Information Content per bp:1.879
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.06%
Number of Background Sequences with motif18.1
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets59.7 +/- 25.4bp
Average Position of motif in Background54.2 +/- 28.3bp
Strand Bias (log2 ratio + to - strand density)3.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:1
Score:0.76
Offset:0
Orientation:forward strand
Alignment:GTTTATTAGG
TTTTATKRGG
 A C T G A C G T A C G T C G A T C G T A C G A T A C G T C G T A C T A G A C T G
C G A T A C G T A C G T A C G T C G T A A G C T C A G T C T A G A T C G A C T G

mix-a/MA0621.1/Jaspar

Match Rank:2
Score:0.76
Offset:-1
Orientation:forward strand
Alignment:-GTTTATTAGG
AATTAATTAGT
 A C G T A C T G A C G T A C G T C G A T C G T A C G A T A C G T C G T A C T A G A C T G
C G T A C T G A G A C T A C G T C G T A C G T A A C G T A C G T C G T A C T A G A C G T

HOXA13/MA0650.1/Jaspar

Match Rank:3
Score:0.76
Offset:-1
Orientation:reverse strand
Alignment:-GTTTATTAGG
TTTTTATTGG-
 A C G T A C T G A C G T A C G T C G A T C G T A C G A T A C G T C G T A C T A G A C T G
C A G T A C G T A C G T C G A T C G A T C G T A C G A T C A G T T C A G A T C G A C G T

LMX1B/MA0703.1/Jaspar

Match Rank:4
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:GTTTATTAGG
-TTAATTAN-
 A C T G A C G T A C G T C G A T C G T A C G A T A C G T C G T A C T A G A C T G
A C G T A G C T C G A T G C T A G C T A C G A T G C A T C T G A T G C A A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:5
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:GTTTATTAGG
TTTTATTRGN
 A C T G A C G T A C G T C G A T C G T A C G A T A C G T C G T A C T A G A C T G
C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A

HOXD13/MA0909.1/Jaspar

Match Rank:6
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-GTTTATTAGG
NTTTTATTGG-
 A C G T A C T G A C G T A C G T C G A T C G T A C G A T A C G T C G T A C T A G A C T G
C A G T C A G T A C G T C G A T C G A T C T G A G C A T C A G T C T A G T A C G A C G T

LMX1A/MA0702.1/Jaspar

Match Rank:7
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:GTTTATTAGG
-TTAATTAA-
 A C T G A C G T A C G T C G A T C G T A C G A T A C G T C G T A C T A G A C T G
A C G T A G C T G A C T G C T A C G T A C G A T G A C T C T G A T C G A A C G T

PH0057.1_Hoxb13/Jaspar

Match Rank:8
Score:0.73
Offset:-4
Orientation:reverse strand
Alignment:----GTTTATTAGG--
NNAATTTTATTGGNTN
 A C G T A C G T A C G T A C G T A C T G A C G T A C G T C G A T C G T A C G A T A C G T C G T A C T A G A C T G A C G T A C G T
A T G C C T A G C G T A C G T A A C G T C G A T C G A T G C A T C T G A G A C T C A G T C T A G T A C G C A T G G A C T A C G T

CDX1/MA0878.1/Jaspar

Match Rank:9
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:GTTTATTAGG
TTTTATTGC-
 A C T G A C G T A C G T C G A T C G T A C G A T A C G T C G T A C T A G A C T G
C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C A C G T

HOXB13/MA0901.1/Jaspar

Match Rank:10
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-GTTTATTAGG
NTTTTATTGG-
 A C G T A C T G A C G T A C G T C G A T C G T A C G A T A C G T C G T A C T A G A C T G
C A T G C A G T C A G T C G A T G C A T C T G A G C A T C A G T C T A G A T C G A C G T