Information for 7-GTGGCATACT (Motif 6)

A C T G A C G T A C T G A C T G A G T C C T G A A C G T T G C A A T G C C G A T
Reverse Opposite:
C G T A T A C G A C G T T G C A A G C T A C T G G T A C A G T C T G C A A G T C
p-value:1e-8
log p-value:-1.946e+01
Information Content per bp:1.792
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.21%
Number of Background Sequences with motif40.3
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets60.5 +/- 29.4bp
Average Position of motif in Background58.4 +/- 32.6bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hic1/MA0739.1/Jaspar

Match Rank:1
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--GTGGCATACT
GGTTGGCAT---
 A C G T A C G T A C T G A C G T A C T G A C T G A G T C C T G A A C G T T G C A A T G C C G A T
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--GTGGCATACT
AGGTGHCAGACA
 A C G T A C G T A C T G A C G T A C T G A C T G A G T C C T G A A C G T T G C A A T G C C G A T
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A

PB0029.1_Hic1_1/Jaspar

Match Rank:3
Score:0.66
Offset:-6
Orientation:reverse strand
Alignment:------GTGGCATACT
NGTAGGTTGGCATNNN
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T A C T G A C T G A G T C C T G A A C G T T G C A A T G C C G A T
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:4
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--GTGGCATACT-
AGGTGNCAGACAG
 A C G T A C G T A C T G A C G T A C T G A C T G A G T C C T G A A C G T T G C A A T G C C G A T A C G T
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

CREB3L1/MA0839.1/Jaspar

Match Rank:5
Score:0.64
Offset:-7
Orientation:reverse strand
Alignment:-------GTGGCATACT
TGATGACGTGGCAN---
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T A C T G A C T G A G T C C T G A A C G T T G C A A T G C C G A T
G A C T C T A G T C G A G A C T A C T G G C T A A G T C A T C G A G C T C T A G C A T G G A T C C T G A A G C T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:6
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GTGGCATACT
NTTGGCANN--
 A C G T A C T G A C G T A C T G A C T G A G T C C T G A A C G T T G C A A T G C C G A T
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T

HIC2/MA0738.1/Jaspar

Match Rank:7
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--GTGGCATACT
NGTGGGCAT---
 A C G T A C G T A C T G A C G T A C T G A C T G A G T C C T G A A C G T T G C A A T G C C G A T
T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:8
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GTGGCATACT
TTGGCA----
 A C T G A C G T A C T G A C T G A G T C C T G A A C G T T G C A A T G C C G A T
G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:9
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GTGGCATACT
NNTTGGCANN--
 A C G T A C G T A C T G A C G T A C T G A C T G A G T C C T G A A C G T T G C A A T G C C G A T
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T

POL006.1_BREu/Jaspar

Match Rank:10
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:GTGGCATACT
--GGCGCGCT
 A C T G A C G T A C T G A C T G A G T C C T G A A C G T T G C A A T G C C G A T
A C G T A C G T C T A G T A C G A G T C A C T G A G T C A T C G A T G C A C G T