Information for 4-GCTGCCCCCHTGCTGD (Motif 2)

C T A G A G T C C G A T A C T G A G T C A G T C G A T C A G T C A G T C G A C T A C G T A T C G A G T C A C G T A C T G C G A T
Reverse Opposite:
G C T A A G T C C G T A A C T G T A G C G T C A C T G A A C T G C T A G C T A G A C T G A C T G A G T C C G T A A C T G A G T C
p-value:1e-16
log p-value:-3.790e+01
Information Content per bp:1.811
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.21%
Number of Background Sequences with motif6.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets50.9 +/- 19.4bp
Average Position of motif in Background58.5 +/- 28.3bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.68
Offset:5
Orientation:reverse strand
Alignment:GCTGCCCCCHTGCTGD-
-----CCCCCTGCTGTG
 C T A G A G T C C G A T A C T G A G T C A G T C G A T C A G T C A G T C G A C T A C G T A T C G A G T C A C G T A C T G C G A T A C G T
A C G T A C G T A C G T A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:2
Score:0.67
Offset:3
Orientation:forward strand
Alignment:GCTGCCCCCHTGCTGD--
---GGCCYCCTGCTGDGH
 C T A G A G T C C G A T A C T G A G T C A G T C G A T C A G T C A G T C G A C T A C G T A T C G A G T C A C G T A C T G C G A T A C G T A C G T
A C G T A C G T A C G T C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

ZIC1/MA0696.1/Jaspar

Match Rank:3
Score:0.62
Offset:3
Orientation:forward strand
Alignment:GCTGCCCCCHTGCTGD-
---GACCCCCCGCTGTG
 C T A G A G T C C G A T A C T G A G T C A G T C G A T C A G T C A G T C G A C T A C G T A T C G A G T C A C G T A C T G C G A T A C G T
A C G T A C G T A C G T A C T G T C G A G T A C G T A C G T A C A G T C G T A C G A T C T C A G A G T C A C G T T C A G G A C T A C T G

PB0206.1_Zic2_2/Jaspar

Match Rank:4
Score:0.61
Offset:5
Orientation:reverse strand
Alignment:GCTGCCCCCHTGCTGD----
-----TCNCCTGCTGNGNNN
 C T A G A G T C C G A T A C T G A G T C A G T C G A T C A G T C A G T C G A C T A C G T A T C G A G T C A C G T A C T G C G A T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:5
Score:0.60
Offset:8
Orientation:forward strand
Alignment:GCTGCCCCCHTGCTGD--
--------CCTGCTGAGH
 C T A G A G T C C G A T A C T G A G T C A G T C G A T C A G T C A G T C G A C T A C G T A T C G A G T C A C G T A C T G C G A T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

PB0205.1_Zic1_2/Jaspar

Match Rank:6
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:GCTGCCCCCHTGCTGD----
-----TNTCCTGCTGTGNNG
 C T A G A G T C C G A T A C T G A G T C A G T C G A T C A G T C A G T C G A C T A C G T A T C G A G T C A C G T A C T G C G A T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

ZIC3/MA0697.1/Jaspar

Match Rank:7
Score:0.59
Offset:3
Orientation:forward strand
Alignment:GCTGCCCCCHTGCTGD--
---GACCCCCCGCTGCGC
 C T A G A G T C C G A T A C T G A G T C A G T C G A T C A G T C A G T C G A C T A C G T A T C G A G T C A C G T A C T G C G A T A C G T A C G T
A C G T A C G T A C G T A C T G T C G A G T A C G A T C G T A C A G T C A G T C A G T C T C A G A G T C A C G T C A T G G A T C C A T G G T A C

ZIC4/MA0751.1/Jaspar

Match Rank:8
Score:0.59
Offset:3
Orientation:forward strand
Alignment:GCTGCCCCCHTGCTGD--
---GACCCCCCGCTGTGC
 C T A G A G T C C G A T A C T G A G T C A G T C G A T C A G T C A G T C G A C T A C G T A T C G A G T C A C G T A C T G C G A T A C G T A C G T
A C G T A C G T A C G T A C T G T C G A G T A C G T A C G T A C G T A C G T A C G A T C C T A G A G T C C A G T C T A G G A C T A C T G G T A C

YY1(Zf)/Promoter/Homer

Match Rank:9
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:GCTGCCCCCHTGCTGD
---GCCGCCATCTTG-
 C T A G A G T C C G A T A C T G A G T C A G T C G A T C A G T C A G T C G A C T A C G T A T C G A G T C A C G T A C T G C G A T
A C G T A C G T A C G T C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:10
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:GCTGCCCCCHTGCTGD----
-----NNTCCTGCTGTGNNN
 C T A G A G T C C G A T A C T G A G T C A G T C G A T C A G T C A G T C G A C T A C G T A T C G A G T C A C G T A C T G C G A T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C