Information for 9-CCCTCCTGTGTTCACA (Motif 8)

T A G C A G T C A G T C A C G T A T G C A G T C A C G T A T C G A C G T A T C G C G A T G C A T G T A C G T C A T G A C C G T A
Reverse Opposite:
G C A T A C T G C A G T A C T G C G T A G C T A A T G C C G T A A T G C C G T A C T A G A T C G C G T A C T A G T C A G A T C G
p-value:1e-8
log p-value:-1.961e+01
Information Content per bp:1.708
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.84%
Number of Background Sequences with motif12.8
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets36.6 +/- 26.3bp
Average Position of motif in Background31.8 +/- 26.8bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--CCCTCCTGTGTTCACA
CCCCCTGCTGTG------
 A C G T A C G T T A G C A G T C A G T C A C G T A T G C A G T C A C G T A T C G A C G T A T C G C G A T G C A T G T A C G T C A T G A C C G T A
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T A C G T A C G T A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:2
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--CCCTCCTGTGTTCACA
NNTCCTGCTGTGNNN---
 A C G T A C G T T A G C A G T C A G T C A C G T A T G C A G T C A C G T A T C G A C G T A T C G C G A T G C A T G T A C G T C A T G A C C G T A
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C A C G T A C G T A C G T

Foxo1/MA0480.1/Jaspar

Match Rank:3
Score:0.66
Offset:3
Orientation:forward strand
Alignment:CCCTCCTGTGTTCACA
---TCCTGTTTACA--
 T A G C A G T C A G T C A C G T A T G C A G T C A C G T A T C G A C G T A T C G C G A T G C A T G T A C G T C A T G A C C G T A
A C G T A C G T A C G T C A G T A T G C A G T C A C G T A C T G A C G T A C G T A C G T G C T A A G T C G C T A A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:4
Score:0.65
Offset:4
Orientation:forward strand
Alignment:CCCTCCTGTGTTCACA
----GCTGTG------
 T A G C A G T C A G T C A C G T A T G C A G T C A C G T A T C G A C G T A T C G C G A T G C A T G T A C G T C A T G A C C G T A
A C G T A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:5
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--CCCTCCTGTGTTCACA
TNTCCTGCTGTGNNG---
 A C G T A C G T T A G C A G T C A G T C A C G T A T G C A G T C A C G T A T C G A C G T A T C G C G A T G C A T G T A C G T C A T G A C C G T A
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G A C G T A C G T A C G T

Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:6
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CCCTCCTGTGTTCACA
ACTTCCTGTT------
 T A G C A G T C A G T C A C G T A T G C A G T C A C G T A T C G A C G T A T C G C G A T G C A T G T A C G T C A T G A C C G T A
T C G A A G T C C G A T C G A T A G T C A G T C A C G T T A C G G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:7
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:CCCTCCTGTGTTCACA-----
----NSTGTTTRCWCAGBNNN
 T A G C A G T C A G T C A C G T A T G C A G T C A C G T A T C G A C G T A T C G C G A T G C A T G T A C G T C A T G A C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A C T A T G C A C G T C T A G C G A T C A G T C A G T T C G A G A T C G C T A A G T C C G T A T C A G A T G C T A G C G A C T T A C G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:8
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----CCCTCCTGTGTTCACA
GGCCYCCTGCTGDGH-----
 A C G T A C G T A C G T A C G T T A G C A G T C A G T C A C G T A T G C A G T C A C G T A T C G A C G T A T C G C G A T G C A T G T A C G T C A T G A C C G T A
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T A C G T A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:9
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CCCTCCTGTGTTCACA
TCNCCTGCTGNGNNN---
 A C G T A C G T T A G C A G T C A G T C A C G T A T G C A G T C A C G T A T C G A C G T A T C G C G A T G C A T G T A C G T C A T G A C C G T A
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G A C G T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:10
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CCCTCCTGTGTTCACA
-CCTGCTGAGH-----
 T A G C A G T C A G T C A C G T A T G C A G T C A C G T A T C G A C G T A T C G C G A T G C A T G T A C G T C A T G A C C G T A
A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T A C G T A C G T A C G T A C G T