Information for 7-CCAGAGGGCGCTGCAG (Motif 4)

T A G C A G T C G C T A A T C G C T G A C T A G C T A G C T A G T A G C A T C G A G T C A G C T A C T G A G T C C T G A A C T G
Reverse Opposite:
A G T C A G C T C T A G A G T C C T G A A C T G T A G C A T C G A G T C A G T C A G T C A G C T A T G C C A G T C T A G A T C G
p-value:1e-13
log p-value:-3.085e+01
Information Content per bp:1.776
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.72%
Number of Background Sequences with motif1.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets69.5 +/- 13.7bp
Average Position of motif in Background39.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----CCAGAGGGCGCTGCAG
GCCASCAGGGGGCGCYVNNG
 A C G T A C G T A C G T A C G T T A G C A G T C G C T A A T C G C T G A C T A G C T A G C T A G T A G C A T C G A G T C A G C T A C T G A G T C C T G A A C T G
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

PB0091.1_Zbtb3_1/Jaspar

Match Rank:2
Score:0.59
Offset:3
Orientation:forward strand
Alignment:CCAGAGGGCGCTGCAG----
---AATCGCACTGCATTCCG
 T A G C A G T C G C T A A T C G C T G A C T A G C T A G C T A G T A G C A T C G A G T C A G C T A C T G A G T C C T G A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T G A C T G A A C G T A T G C A T C G G T A C C T G A A T G C C G A T A C T G A T G C G T C A A G C T A C G T A T G C A T G C A C T G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:3
Score:0.54
Offset:7
Orientation:reverse strand
Alignment:CCAGAGGGCGCTGCAG------
-------DCHCAGCAGGRGGCC
 T A G C A G T C G C T A A T C G C T G A C T A G C T A G C T A G T A G C A T C G A G T C A G C T A C T G A G T C C T G A A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

CTCF/MA0139.1/Jaspar

Match Rank:4
Score:0.54
Offset:-6
Orientation:forward strand
Alignment:------CCAGAGGGCGCTGCAG
TGGCCACCAGGGGGCGCTA---
 A C G T A C G T A C G T A C G T A C G T A C G T T A G C A G T C G C T A A T C G C T G A C T A G C T A G C T A G T A G C A T C G A G T C A G C T A C T G A G T C C T G A A C T G
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A A C G T A C G T A C G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:5
Score:0.51
Offset:-6
Orientation:reverse strand
Alignment:------CCAGAGGGCGCTGCAG
TGGCCACCAGGTGGCACTNT--
 A C G T A C G T A C G T A C G T A C G T A C G T T A G C A G T C G C T A A T C G C T G A C T A G C T A G C T A G T A G C A T C G A G T C A G C T A C T G A G T C C T G A A C T G
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.51
Offset:8
Orientation:forward strand
Alignment:CCAGAGGGCGCTGCAG----
--------CACAGCAGGGGG
 T A G C A G T C G C T A A T C G C T G A C T A G C T A G C T A G T A G C A T C G A G T C A G C T A C T G A G T C C T G A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer

Match Rank:7
Score:0.50
Offset:4
Orientation:forward strand
Alignment:CCAGAGGGCGCTGCAG---
----AAGGKGRCGCAGGCA
 T A G C A G T C G C T A A T C G C T G A C T A G C T A G C T A G T A G C A T C G A G T C A G C T A C T G A G T C C T G A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T G C A C G T A A C T G T C A G C A G T C A T G T C A G G A T C T A C G A G T C T G C A A C T G A C T G T G A C G T C A

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:8
Score:0.50
Offset:7
Orientation:reverse strand
Alignment:CCAGAGGGCGCTGCAG-
-------DCTCAGCAGG
 T A G C A G T C G C T A A T C G C T G A C T A G C T A G C T A G T A G C A T C G A G T C A G C T A C T G A G T C C T G A A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G

Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer

Match Rank:9
Score:0.50
Offset:2
Orientation:forward strand
Alignment:CCAGAGGGCGCTGCAG
--RGKGGGCGGAGC--
 T A G C A G T C G C T A A T C G C T G A C T A G C T A G C T A G T A G C A T C G A G T C A G C T A C T G A G T C C T G A A C T G
A C G T A C G T C T G A T C A G C A G T C T A G A C T G C T A G G A T C A T C G A C T G C T G A T C A G G A T C A C G T A C G T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:10
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-CCAGAGGGCGCTGCAG
AACAGATGGC-------
 A C G T T A G C A G T C G C T A A T C G C T G A C T A G C T A G C T A G T A G C A T C G A G T C A G C T A C T G A G T C C T G A A C T G
C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T