Information for 5-CRCAGCWCARCGYCTM (Motif 2)

A G T C C T G A A T G C C G T A A C T G A T G C G C A T A T G C C G T A C T A G A G T C C T A G A G T C A G T C A C G T G T A C
Reverse Opposite:
A C T G G T C A A C T G C T A G A G T C A C T G A G T C A C G T A T C G C G T A T A C G A G T C A C G T A T C G A G C T A C T G
p-value:1e-11
log p-value:-2.708e+01
Information Content per bp:1.852
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.83%
Number of Background Sequences with motif4.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets57.8 +/- 27.7bp
Average Position of motif in Background37.1 +/- 31.4bp
Strand Bias (log2 ratio + to - strand density)3.3
Multiplicity (# of sites on avg that occur together)1.57
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL009.1_DCE_S_II/Jaspar

Match Rank:1
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CRCAGCWCARCGYCTM
CACAGN----------
 A G T C C T G A A T G C C G T A A C T G A T G C G C A T A T G C C G T A C T A G A G T C C T A G A G T C A G T C A C G T G T A C
T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.51
Offset:0
Orientation:forward strand
Alignment:CRCAGCWCARCGYCTM
CAAAGGTCAG------
 A G T C C T G A A T G C C G T A A C T G A T G C G C A T A T G C C G T A C T A G A G T C C T A G A G T C A G T C A C G T G T A C
A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T A C G T A C G T A C G T A C G T A C G T

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:3
Score:0.50
Offset:3
Orientation:forward strand
Alignment:CRCAGCWCARCGYCTM
---AGGTCAAGGTCA-
 A G T C C T G A A T G C C G T A A C T G A T G C G C A T A T G C C G T A C T A G A G T C C T A G A G T C A G T C A C G T G T A C
A C G T A C G T A C G T C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:4
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-CRCAGCWCARCGYCTM
DCHCAGCAGGRGGCC--
 A C G T A G T C C T G A A T G C C G T A A C T G A T G C G C A T A T G C C G T A C T A G A G T C C T A G A G T C A G T C A C G T G T A C
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:5
Score:0.50
Offset:2
Orientation:forward strand
Alignment:CRCAGCWCARCGYCTM
--CAGCC---------
 A G T C C T G A A T G C C G T A A C T G A T G C G C A T A T G C C G T A C T A G A G T C C T A G A G T C A G T C A C G T G T A C
A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZIC1/MA0696.1/Jaspar

Match Rank:6
Score:0.49
Offset:0
Orientation:reverse strand
Alignment:CRCAGCWCARCGYCTM
CACAGCGGGGGGTC--
 A G T C C T G A A T G C C G T A A C T G A T G C G C A T A T G C C G T A C T A G A G T C C T A G A G T C A G T C A C G T G T A C
T G A C C T G A A G T C T G C A T C A G A G T C C T A G C A T G T C A G C A T G C A T G C A T G A G C T T G A C A C G T A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:7
Score:0.49
Offset:3
Orientation:forward strand
Alignment:CRCAGCWCARCGYCTM
---AGGTCAAGGTCA-
 A G T C C T G A A T G C C G T A A C T G A T G C G C A T A T G C C G T A C T A G A G T C C T A G A G T C A G T C A C G T G T A C
A C G T A C G T A C G T T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A A C G T

PB0199.1_Zfp161_2/Jaspar

Match Rank:8
Score:0.48
Offset:1
Orientation:forward strand
Alignment:CRCAGCWCARCGYCTM
-GCCGCGCAGTGCGT-
 A G T C C T G A A T G C C G T A A C T G A T G C G C A T A T G C C G T A C T A G A G T C C T A G A G T C A G T C A C G T G T A C
A C G T C A T G G A T C A G T C T A C G G A T C C T A G T G A C G T C A C T A G A C G T C T A G G T A C T C A G A G C T A C G T

RREB1/MA0073.1/Jaspar

Match Rank:9
Score:0.48
Offset:-1
Orientation:forward strand
Alignment:-CRCAGCWCARCGYCTM---
CCCCAAACCACCCCCCCCCA
 A C G T A G T C C T G A A T G C C G T A A C T G A T G C G C A T A T G C C G T A C T A G A G T C C T A G A G T C A G T C A C G T G T A C A C G T A C G T A C G T
G T A C G T A C G T A C A G T C G T C A G T C A G T C A G T A C A G T C C G T A G T A C G T A C G T A C T G A C G T A C G T A C G T A C G T A C T A G C T G A C

PB0207.1_Zic3_2/Jaspar

Match Rank:10
Score:0.47
Offset:-3
Orientation:forward strand
Alignment:---CRCAGCWCARCGYCTM
GAGCACAGCAGGACA----
 A C G T A C G T A C G T A G T C C T G A A T G C C G T A A C T G A T G C G C A T A T G C C G T A C T A G A G T C C T A G A G T C A G T C A C G T G T A C
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A A C G T A C G T A C G T A C G T