Information for 9-CCTCTCCATCAAG (Motif 7)

A G T C A G T C A C G T G T A C A C G T A G T C A G T C C G T A A C G T A G T C G T C A C G T A A C T G
Reverse Opposite:
A G T C A C G T A C G T A C T G C G T A A C G T A C T G A C T G C G T A A C T G C G T A A C T G A C T G
p-value:1e-8
log p-value:-1.926e+01
Information Content per bp:1.940
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.47%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets47.5 +/- 26.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CCTCTCCATCAAG
NCTGTCAATCAN-
 A G T C A G T C A C G T G T A C A C G T A G T C A G T C C G T A A C G T A G T C G T C A C G T A A C T G
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A A C G T

PH0134.1_Pbx1/Jaspar

Match Rank:2
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CCTCTCCATCAAG-----
-TCACCCATCAATAAACA
 A G T C A G T C A C G T G T A C A C G T A G T C A G T C C G T A A C G T A G T C G T C A C G T A A C T G A C G T A C G T A C G T A C G T A C G T
A C G T G A C T A G T C C G T A G A T C G T A C T G A C C T G A C G A T G T A C G T C A G C T A C G A T G T A C G C T A C G A T T G A C T G C A

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:3
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CCTCTCCATCAAG
GSCTGTCACTCA--
 A C G T A G T C A G T C A C G T G T A C A C G T A G T C A G T C C G T A A C G T A G T C G T C A C G T A A C T G
C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A A C G T A C G T

PBX1/MA0070.1/Jaspar

Match Rank:4
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CCTCTCCATCAAG
-CCATCAATCAAA
 A G T C A G T C A C G T G T A C A C G T A G T C A G T C C G T A A C G T A G T C G T C A C G T A A C T G
A C G T G A T C A G T C T C G A G A C T A G T C G T C A C G T A A C G T A G T C G C T A C G T A C G T A

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:5
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CCTCTCCATCAAG
GYCATCMATCAT-
 A G T C A G T C A C G T G T A C A C G T A G T C A G T C C G T A A C G T A G T C G T C A C G T A A C T G
T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:6
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CCTCTCCATCAAG
SCTGTCAVTCAV-
 A G T C A G T C A C G T G T A C A C G T A G T C A G T C C G T A A C G T A G T C G T C A C G T A A C T G
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:7
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-CCTCTCCATCAAG
NSCACTYVAV----
 A C G T A G T C A G T C A C G T G T A C A C G T A G T C A G T C C G T A A C G T A G T C G T C A C G T A A C T G
C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G A C G T A C G T A C G T A C G T

Dux/MA0611.1/Jaspar

Match Rank:8
Score:0.52
Offset:4
Orientation:forward strand
Alignment:CCTCTCCATCAAG
----CCAATCAA-
 A G T C A G T C A C G T G T A C A C G T A G T C A G T C C G T A A C G T A G T C G T C A C G T A A C T G
A C G T A C G T A C G T A C G T A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.52
Offset:3
Orientation:forward strand
Alignment:CCTCTCCATCAAG
---GGCCATTAAC
 A G T C A G T C A C G T G T A C A C G T A G T C A G T C C G T A A C G T A G T C G T C A C G T A A C T G
A C G T A C G T A C G T C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:10
Score:0.51
Offset:0
Orientation:forward strand
Alignment:CCTCTCCATCAAG
ATTTTCCATT---
 A G T C A G T C A C G T G T A C A C G T A G T C A G T C C G T A A C G T A G T C G T C A C G T A A C T G
C G T A A C G T A C G T A C G T A C G T A G T C A G T C C T G A A G C T A G C T A C G T A C G T A C G T