Information for 9-TCTATTATTC (Motif 4)

A C G T A T G C A C G T C T G A A G C T A G C T C T G A A G C T A C G T A G T C
Reverse Opposite:
A C T G C G T A C T G A G A C T C T G A C T G A A G C T C G T A A T C G G T C A
p-value:1e-9
log p-value:-2.084e+01
Information Content per bp:1.852
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.93%
Number of Background Sequences with motif16.8
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets56.5 +/- 31.9bp
Average Position of motif in Background60.6 +/- 27.9bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0074.1_Sox8_1/Jaspar

Match Rank:1
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---TCTATTATTC----
GTATCTATTGTTCTTTA
 A C G T A C G T A C G T A C G T A T G C A C G T C T G A A G C T A G C T C T G A A G C T A C G T A G T C A C G T A C G T A C G T A C G T
C A G T C A G T C G T A C G A T A G C T G C A T C G T A G A C T C G A T T C A G C G A T G A C T G T A C G C A T C A G T C G A T C G T A

PB0065.1_Sox15_1/Jaspar

Match Rank:2
Score:0.72
Offset:-3
Orientation:reverse strand
Alignment:---TCTATTATTC----
ANNTCTATTGTTCNNNA
 A C G T A C G T A C G T A C G T A T G C A C G T C T G A A G C T A G C T C T G A A G C T A C G T A G T C A C G T A C G T A C G T A C G T
C G T A C G T A T C G A A G C T G A T C G C A T C G T A C G A T C G A T C T A G C G A T G A C T G T A C G C T A G T A C G A C T C G T A

PB0173.1_Sox21_2/Jaspar

Match Rank:3
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--TCTATTATTC-----
AATCAATTGTTCCGCTA
 A C G T A C G T A C G T A T G C A C G T C T G A A G C T A G C T C T G A A G C T A C G T A G T C A C G T A C G T A C G T A C G T A C G T
T G A C T C A G A G C T A T G C G C T A C G T A A G C T C G A T A T C G C G A T A G C T A T G C T G A C A C T G G A T C C A G T T C G A

PB0072.1_Sox5_1/Jaspar

Match Rank:4
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--TCTATTATTC----
NNTTTATTGTTCTNNN
 A C G T A C G T A C G T A T G C A C G T C T G A A G C T A G C T C T G A A G C T A C G T A G T C A C G T A C G T A C G T A C G T
G C T A C G A T G C A T G A C T G C A T C G T A G A C T G C A T C T A G G A C T A G C T G A T C G A C T G C T A C G T A G C T A

PB0073.1_Sox7_1/Jaspar

Match Rank:5
Score:0.68
Offset:-6
Orientation:reverse strand
Alignment:------TCTATTATTC------
TNNANNTCTATTGTTNTNNANN
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A C G T C T G A A G C T A G C T C T G A A G C T A C G T A G T C A C G T A C G T A C G T A C G T A C G T A C G T
C G A T T C A G C G T A C G T A C T G A C G A T C G A T A G T C G A C T C G T A A G C T C G A T T C A G C G A T G A C T G A T C G C A T C G A T G A C T T G C A C G A T C A G T

PB0070.1_Sox30_1/Jaspar

Match Rank:6
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---TCTATTATTC---
ANNTCCATTGTTCNNN
 A C G T A C G T A C G T A C G T A T G C A C G T C T G A A G C T A G C T C T G A A G C T A C G T A G T C A C G T A C G T A C G T
C T G A C T G A C A G T C G A T A G T C G T A C G C T A A G C T C A G T T C A G C G A T A G C T T A G C G C T A C G A T G A C T

SOX9/MA0077.1/Jaspar

Match Rank:7
Score:0.67
Offset:1
Orientation:forward strand
Alignment:TCTATTATTC
-CCATTGTTC
 A C G T A T G C A C G T C T G A A G C T A G C T C T G A A G C T A C G T A G T C
A C G T A G T C G A T C G C T A C A G T C G A T T A C G C G A T G C A T G A T C

PB0183.1_Sry_2/Jaspar

Match Rank:8
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--TCTATTATTC-----
CNNNTATTGTTCNNNNN
 A C G T A C G T A C G T A T G C A C G T C T G A A G C T A G C T C T G A A G C T A C G T A G T C A C G T A C G T A C G T A C G T A C G T
A T G C C T G A A G T C A G T C G A C T C G T A A C G T A G C T T C A G G C A T A C G T A G T C G T A C C A T G G C A T C T A G C T G A

PB0063.1_Sox13_1/Jaspar

Match Rank:9
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--TCTATTATTC----
AANTTATTGTTCTNNA
 A C G T A C G T A C G T A T G C A C G T C T G A A G C T A G C T C T G A A G C T A C G T A G T C A C G T A C G T A C G T A C G T
C G T A C G T A G C A T G C A T G C A T C G T A A G C T C G A T C T A G C G A T G A C T G T A C A G C T G C A T C T G A G C T A

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.65
Offset:0
Orientation:forward strand
Alignment:TCTATTATTC
NCCATTGTTC
 A C G T A T G C A C G T C T G A A G C T A G C T C T G A A G C T A C G T A G T C
A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C