Information for 4-CAGAGGGAGCTTT (Motif 2)

A G T C C G T A A C T G G T C A C T A G C T A G A C T G G T C A A C T G A G T C G A C T A C G T G A C T
Reverse Opposite:
C G T A T G C A C T G A A C T G A G T C A C G T A G T C A G T C A G T C A C G T G T A C A C G T C T A G
p-value:1e-23
log p-value:-5.511e+01
Information Content per bp:1.797
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif2.21%
Number of Background Sequences with motif26.0
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets55.7 +/- 24.4bp
Average Position of motif in Background50.2 +/- 20.5bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL013.1_MED-1/Jaspar

Match Rank:1
Score:0.68
Offset:4
Orientation:reverse strand
Alignment:CAGAGGGAGCTTT
----CGGAGC---
 A G T C C G T A A C T G G T C A C T A G C T A G A C T G G T C A A C T G A G T C G A C T A C G T G A C T
A C G T A C G T A C G T A C G T A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:2
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CAGAGGGAGCTTT
DCHCAGCAGGRGGCC-
 A C G T A C G T A C G T A G T C C G T A A C T G G T C A C T A G C T A G A C T G G T C A A C T G A G T C G A C T A C G T G A C T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C A C G T

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----CAGAGGGAGCTTT--
GCCASCAGGGGGCGCYVNNG
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G G T C A C T A G C T A G A C T G G T C A A C T G A G T C G A C T A C G T G A C T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:CAGAGGGAGCTTT-
----GGGAGGACNG
 A G T C C G T A A C T G G T C A C T A G C T A G A C T G G T C A A C T G A G T C G A C T A C G T G A C T A C G T
A C G T A C G T A C G T A C G T C T A G A C T G A C T G C G T A A C T G A T C G C G T A A T G C A G C T T A C G

PB0099.1_Zfp691_1/Jaspar

Match Rank:5
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CAGAGGGAGCTTT-----
-NNNNTGAGCACTGTNNG
 A G T C C G T A A C T G G T C A C T A G C T A G A C T G G T C A A C T G A G T C G A C T A C G T G A C T A C G T A C G T A C G T A C G T A C G T
A C G T G C T A G A C T C G T A T C A G A C G T A C T G C T G A A C T G A G T C C G T A G T A C A G C T C A T G A G C T C A G T G T A C T C A G

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:6
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---CAGAGGGAGCTTT
DCTCAGCAGG------
 A C G T A C G T A C G T A G T C C G T A A C T G G T C A C T A G C T A G A C T G G T C A A C T G A G T C G A C T A C G T G A C T
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CAGAGGGAGCTTT
CACAGCAGGGGG---
 A C G T A C G T A G T C C G T A A C T G G T C A C T A G C T A G A C T G G T C A A C T G A G T C G A C T A C G T G A C T
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T A C G T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:8
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--CAGAGGGAGCTTT
AACAGATGGC-----
 A C G T A C G T A G T C C G T A A C T G G T C A C T A G C T A G A C T G G T C A A C T G A G T C G A C T A C G T G A C T
C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T

ZIC3/MA0697.1/Jaspar

Match Rank:9
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---CAGAGGGAGCTTT
NCGCAGCGGGGGGTC-
 A C G T A C G T A C G T A G T C C G T A A C T G G T C A C T A G C T A G A C T G G T C A A C T G A G T C G A C T A C G T G A C T
C A T G G T A C C T A G G A T C T G C A T C A G A G T C C T A G A C T G A C T G C A T G C A T G C A T G A G C T T G A C A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:10
Score:0.55
Offset:6
Orientation:forward strand
Alignment:CAGAGGGAGCTTT
------CAGCC--
 A G T C C G T A A C T G G T C A C T A G C T A G A C T G G T C A A C T G A G T C G A C T A C G T G A C T
A C G T A C G T A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T