Information for 5-GTCTGCTTTGGGC (Motif 11)

C A T G A C G T A G T C A C G T A C T G A G T C A C G T A C G T C G A T A C T G A C T G A C T G A G T C
Reverse Opposite:
A C T G A G T C A G T C A G T C C G T A C G T A C G T A A C T G A G T C C G T A A C T G G T C A G A T C
p-value:1e-10
log p-value:-2.491e+01
Information Content per bp:1.914
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.59%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets52.0 +/- 34.0bp
Average Position of motif in Background58.1 +/- 4.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TFAP2A/MA0003.3/Jaspar

Match Rank:1
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:GTCTGCTTTGGGC-
---NGCCTGAGGCN
 C A T G A C G T A G T C A C G T A C T G A G T C A C G T A C G T C G A T A C T G A C T G A C T G A G T C A C G T
A C G T A C G T A C G T G C A T A T C G A T G C A G T C A C G T A T C G T C G A T C A G A T C G A T G C C A T G

TFAP2C(var.2)/MA0814.1/Jaspar

Match Rank:2
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:GTCTGCTTTGGGC-
---NGCCTNAGGCN
 C A T G A C G T A G T C A C G T A C T G A G T C A C G T A C G T C G A T A C T G A C T G A C T G A G T C A C G T
A C G T A C G T A C G T G C A T A T C G A T G C A G T C A G C T A T C G T C G A T C A G A T C G A T G C C A G T

TFAP2B(var.2)/MA0812.1/Jaspar

Match Rank:3
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:GTCTGCTTTGGGC-
---TGCCTGAGGCN
 C A T G A C G T A G T C A C G T A C T G A G T C A C G T A C G T C G A T A C T G A C T G A C T G A G T C A C G T
A C G T A C G T A C G T G C A T A T C G A T G C A G T C A C G T A T C G T C G A T C A G A T C G A T G C C A G T

PB0133.1_Hic1_2/Jaspar

Match Rank:4
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:GTCTGCTTTGGGC------
---NNNNTTGGGCACNNCN
 C A T G A C G T A G T C A C G T A C T G A G T C A C G T A C G T C G A T A C T G A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A G T C G A T C C A G T G C A T G C A T C A G T A C T G A C T G A C T G A G T C C G T A G A T C G T C A G T A C T A G C G T A C

THAP1/MA0597.1/Jaspar

Match Rank:5
Score:0.55
Offset:6
Orientation:reverse strand
Alignment:GTCTGCTTTGGGC--
------TNNGGGCAG
 C A T G A C G T A G T C A C G T A C T G A G T C A C G T A C G T C G A T A C T G A C T G A C T G A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:6
Score:0.54
Offset:1
Orientation:forward strand
Alignment:GTCTGCTTTGGGC--
-TCACCTCTGGGCAG
 C A T G A C G T A G T C A C G T A C T G A G T C A C G T A C G T C G A T A C T G A C T G A C T G A G T C A C G T A C G T
A C G T G A C T G T A C C T G A A G T C G A T C A G C T A T G C G C A T C T A G C T A G C A T G A G T C C G T A A C T G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----GTCTGCTTTGGGC
VBSYGTCTGG-------
 A C G T A C G T A C G T A C G T C A T G A C G T A G T C A C G T A C T G A G T C A C G T A C G T C G A T A C T G A C T G A C T G A G T C
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RREB1/MA0073.1/Jaspar

Match Rank:8
Score:0.53
Offset:-7
Orientation:reverse strand
Alignment:-------GTCTGCTTTGGGC
NGGGGGGGGGTGGTTTGGGG
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G A C G T A G T C A C G T A C T G A G T C A C G T A C G T C G A T A C T G A C T G A C T G A G T C
A C G T A T C G C A T G A C T G C A T G A C T G A C T G A C T G A C T G A C T G A C G T A C T G C A T G A C G T A C G T A C G T A C T G A C T G A C T G A C T G

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--GTCTGCTTTGGGC
CCCCCTGCTGTG---
 A C G T A C G T C A T G A C G T A G T C A C G T A C T G A G T C A C G T A C G T C G A T A C T G A C T G A C T G A G T C
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T A C G T

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:10
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---GTCTGCTTTGGGC
NNTGTTTATTTTGGCA
 A C G T A C G T A C G T C A T G A C G T A G T C A C G T A C T G A G T C A C G T A C G T C G A T A C T G A C T G A C T G A G T C
C G A T G A C T C G A T T C A G G A C T A C G T C A G T C T G A G A C T G A C T A G C T C G A T A C T G A T C G G T A C G C T A