Information for 1-RSTGCCMYCTGSTGGC (Motif 1)

C T G A A T G C A G C T C A T G G T A C A T G C G T A C G A T C A G T C G C A T C T A G A T C G A G C T A C T G T C A G G T A C
Reverse Opposite:
C A T G A G T C A G T C C T G A A T G C G A T C C G T A A C T G C T A G A C T G A T C G C A T G G T A C C T G A T A C G G A C T
p-value:1e-38
log p-value:-8.767e+01
Information Content per bp:1.640
Number of Target Sequences with motif56.0
Percentage of Target Sequences with motif6.63%
Number of Background Sequences with motif284.4
Percentage of Background Sequences with motif0.60%
Average Position of motif in Targets55.6 +/- 23.4bp
Average Position of motif in Background49.7 +/- 27.7bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.95
Offset:-4
Orientation:forward strand
Alignment:----RSTGCCMYCTGSTGGC
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T A C G T A C G T C T G A A T G C A G C T C A T G G T A C A T G C G T A C G A T C A G T C G C A T C T A G A T C G A G C T A C T G T C A G G T A C
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:2
Score:0.95
Offset:-2
Orientation:forward strand
Alignment:--RSTGCCMYCTGSTGGC--
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T C T G A A T G C A G C T C A T G G T A C A T G C G T A C G A T C A G T C G C A T C T A G A T C G A G C T A C T G T C A G G T A C A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

CTCF/MA0139.1/Jaspar

Match Rank:3
Score:0.94
Offset:-1
Orientation:reverse strand
Alignment:-RSTGCCMYCTGSTGGC--
TAGCGCCCCCTGGTGGCCA
 A C G T C T G A A T G C A G C T C A T G G T A C A T G C G T A C G A T C A G T C G C A T C T A G A T C G A G C T A C T G T C A G G T A C A C G T A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:4
Score:0.61
Offset:3
Orientation:forward strand
Alignment:RSTGCCMYCTGSTGGC
---GCCATCTGTT---
 C T G A A T G C A G C T C A T G G T A C A T G C G T A C G A T C A G T C G C A T C T A G A T C G A G C T A C T G T C A G G T A C
A C G T A C G T A C G T T C A G T G A C G T A C C G T A A C G T T G A C A C G T T C A G A G C T G A C T A C G T A C G T A C G T

PB0076.1_Sp4_1/Jaspar

Match Rank:5
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---RSTGCCMYCTGSTGGC
GGTCCCGCCCCCTTCTC--
 A C G T A C G T A C G T C T G A A T G C A G C T C A T G G T A C A T G C G T A C G A T C A G T C G C A T C T A G A T C G A G C T A C T G T C A G G T A C
A C T G C A T G G A C T G T A C G T A C A G T C C T A G A G T C A T G C A G T C G T A C A G T C G A C T G A C T T A G C A G C T A G T C A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:6
Score:0.59
Offset:1
Orientation:forward strand
Alignment:RSTGCCMYCTGSTGGC
-ATGCCAACC------
 C T G A A T G C A G C T C A T G G T A C A T G C G T A C G A T C A G T C G C A T C T A G A T C G A G C T A C T G T C A G G T A C
A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C A C G T A C G T A C G T A C G T A C G T A C G T

PB0101.1_Zic1_1/Jaspar

Match Rank:7
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:RSTGCCMYCTGSTGGC-
---CCCCCCCGGGGGNN
 C T G A A T G C A G C T C A T G G T A C A T G C G T A C G A T C A G T C G C A T C T A G A T C G A G C T A C T G T C A G G T A C A C G T
A C G T A C G T A C G T T A G C T G A C G A T C G T A C G T A C A T G C T A G C A T C G T A C G A C T G A C T G C A T G C A G T T A C G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:8
Score:0.59
Offset:2
Orientation:forward strand
Alignment:RSTGCCMYCTGSTGGC-
--GGCCYCCTGCTGDGH
 C T G A A T G C A G C T C A T G G T A C A T G C G T A C G A T C A G T C G C A T C T A G A T C G A G C T A C T G T C A G G T A C A C G T
A C G T A C G T C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

ZIC4/MA0751.1/Jaspar

Match Rank:9
Score:0.58
Offset:2
Orientation:forward strand
Alignment:RSTGCCMYCTGSTGGC-
--GACCCCCCGCTGTGC
 C T G A A T G C A G C T C A T G G T A C A T G C G T A C G A T C A G T C G C A T C T A G A T C G A G C T A C T G T C A G G T A C A C G T
A C G T A C G T A C T G T C G A G T A C G T A C G T A C G T A C G T A C G A T C C T A G A G T C C A G T C T A G G A C T A C T G G T A C

THAP1/MA0597.1/Jaspar

Match Rank:10
Score:0.58
Offset:1
Orientation:forward strand
Alignment:RSTGCCMYCTGSTGGC
-CTGCCCGCA------
 C T G A A T G C A G C T C A T G G T A C A T G C G T A C G A T C A G T C G C A T C T A G A T C G A G C T A C T G T C A G G T A C
A C G T A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A A C G T A C G T A C G T A C G T A C G T A C G T