Information for 6-AGGCAGGCTG (Motif 15)

C G T A T C A G A C T G G A T C G C T A T A C G A T C G A G T C C G A T C T A G
Reverse Opposite:
G A T C G C T A T C A G T A G C A T G C C G A T C T A G T A G C A G T C G C A T
p-value:1e-10
log p-value:-2.472e+01
Information Content per bp:1.647
Number of Target Sequences with motif137.0
Percentage of Target Sequences with motif15.80%
Number of Background Sequences with motif2755.1
Percentage of Background Sequences with motif8.77%
Average Position of motif in Targets52.8 +/- 25.9bp
Average Position of motif in Background49.8 +/- 34.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-AGGCAGGCTG
AAGGCAAGTGT
 A C G T C G T A T C A G A C T G G A T C G C T A T A C G A T C G A G T C C G A T C T A G
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-AGGCAGGCTG---
CTGGCAGNCTGCCA
 A C G T C G T A T C A G A C T G G A T C G C T A T A C G A T C G A G T C C G A T C T A G A C G T A C G T A C G T
A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A

POL006.1_BREu/Jaspar

Match Rank:3
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:AGGCAGGCTG
-GGCGCGCT-
 C G T A T C A G A C T G G A T C G C T A T A C G A T C G A G T C C G A T C T A G
A C G T C T A G T A C G A G T C A C T G A G T C A T C G A T G C A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:4
Score:0.58
Offset:3
Orientation:forward strand
Alignment:AGGCAGGCTG---
---CCTGCTGAGH
 C G T A T C A G A C T G G A T C G C T A T A C G A T C G A G T C C G A T C T A G A C G T A C G T A C G T
A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.58
Offset:3
Orientation:forward strand
Alignment:AGGCAGGCTG-
---TWGTCTGV
 C G T A T C A G A C T G G A T C G C T A T A C G A T C G A G T C C G A T C T A G A C G T
A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G

POL010.1_DCE_S_III/Jaspar

Match Rank:6
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:AGGCAGGCTG
-----NGCTN
 C G T A T C A G A C T G G A T C G C T A T A C G A T C G A G T C C G A T C T A G
A C G T A C G T A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G

PB0207.1_Zic3_2/Jaspar

Match Rank:7
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:AGGCAGGCTG-----
NNTCCTGCTGTGNNN
 C G T A T C A G A C T G G A T C G C T A T A C G A T C G A G T C C G A T C T A G A C G T A C G T A C G T A C G T A C G T
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:8
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--AGGCAGGCTG---
SCAGYCADGCATGAC
 A C G T A C G T C G T A T C A G A C T G G A T C G C T A T A C G A T C G A G T C C G A T C T A G A C G T A C G T A C G T
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

THAP1/MA0597.1/Jaspar

Match Rank:9
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---AGGCAGGCTG
TNNGGGCAG----
 A C G T A C G T A C G T C G T A T C A G A C T G G A T C G C T A T A C G A T C G A G T C C G A T C T A G
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:10
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:AGGCAGGCTG-----
TCNCCTGCTGNGNNN
 C G T A T C A G A C T G G A T C G C T A T A C G A T C G A G T C C G A T C T A G A C G T A C G T A C G T A C G T A C G T
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G