Information for 14-CTAACCATCA (Motif 52)

A G T C A C G T C G T A C G T A A G T C G T A C C G T A A C G T A G T C C G T A
Reverse Opposite:
A C G T A C T G C G T A A C G T A C T G A C T G A C G T C G A T C G T A A C T G
p-value:1e-4
log p-value:-1.119e+01
Information Content per bp:1.939
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.73%
Number of Background Sequences with motif21.0
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets48.3 +/- 22.2bp
Average Position of motif in Background56.1 +/- 21.7bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.40
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0172.1_Sox1_2/Jaspar

Match Rank:1
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--CTAACCATCA---
NNNTAACAATTATAN
 A C G T A C G T A G T C A C G T C G T A C G T A A G T C G T A C C G T A A C G T A G T C C G T A A C G T A C G T A C G T
A T G C T C A G G T A C A C G T T G C A T G C A A T G C C T G A C T G A G A C T C G A T C T G A G A C T C T G A C A T G

PH0134.1_Pbx1/Jaspar

Match Rank:2
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CTAACCATCA-------
TCACCCATCAATAAACA
 A G T C A C G T C G T A C G T A A G T C G T A C C G T A A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G A C T A G T C C G T A G A T C G T A C T G A C C T G A C G A T G T A C G T C A G C T A C G A T G T A C G C T A C G A T T G A C T G C A

Dux/MA0611.1/Jaspar

Match Rank:3
Score:0.65
Offset:3
Orientation:forward strand
Alignment:CTAACCATCA-
---CCAATCAA
 A G T C A C G T C G T A C G T A A G T C G T A C C G T A A C G T A G T C C G T A A C G T
A C G T A C G T A C G T A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A

Sox5/MA0087.1/Jaspar

Match Rank:4
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:CTAACCATCA
-NAACAAT--
 A G T C A C G T C G T A C G T A A G T C G T A C C G T A A C G T A G T C C G T A
A C G T G C A T C G T A C T G A A G T C C G T A G T C A A C G T A C G T A C G T

Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer

Match Rank:5
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CTAACCATCA-
-AAACMATTAN
 A G T C A C G T C G T A C G T A A G T C G T A C C G T A A C G T A G T C C G T A A C G T
A C G T T C G A C T G A C T G A A T G C G T A C G T C A A G C T A G C T C G T A T C A G

PBX1/MA0070.1/Jaspar

Match Rank:6
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CTAACCATCA--
CCATCAATCAAA
 A G T C A C G T C G T A C G T A A G T C G T A C C G T A A C G T A G T C C G T A A C G T A C G T
G A T C A G T C T C G A G A C T A G T C G T C A C G T A A C G T A G T C G C T A C G T A C G T A

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:7
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CTAACCATCA-
GYCATCMATCAT
 A C G T A G T C A C G T C G T A C G T A A G T C G T A C C G T A A C G T A G T C C G T A A C G T
T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.60
Offset:2
Orientation:forward strand
Alignment:CTAACCATCA--
--GGCCATTAAC
 A G T C A C G T C G T A C G T A A G T C G T A C C G T A A C G T A G T C C G T A A C G T A C G T
A C G T A C G T C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CTAACCATCA-
NCTGTCAATCAN
 A C G T A G T C A C G T C G T A C G T A A G T C G T A C C G T A A C G T A G T C C G T A A C G T
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:10
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---CTAACCATCA
NNACTTACCTN--
 A C G T A C G T A C G T A G T C A C G T C G T A C G T A A G T C G T A C C G T A A C G T A G T C C G T A
C T G A G A C T G C T A G A T C G C A T G A C T C G T A A G T C G A T C G C A T A C T G A C G T A C G T