Information for 23-GCCCTTAACHGCC (Motif 47)

A C T G A T G C G A T C G T A C C G A T A C G T G C T A G T C A G T A C G A C T C A T G A T G C T G A C
Reverse Opposite:
A C T G A T C G G T A C C T G A A C T G C A G T C G A T G T C A C G T A A C T G C A T G A T C G T G A C
p-value:1e-7
log p-value:-1.643e+01
Information Content per bp:1.677
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif2.19%
Number of Background Sequences with motif173.2
Percentage of Background Sequences with motif0.37%
Average Position of motif in Targets43.7 +/- 23.1bp
Average Position of motif in Background49.5 +/- 27.8bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GCCCTTAACHGCC
GGCCATTAAC----
 A C G T A C T G A T G C G A T C G T A C C G A T A C G T G C T A G T C A G T A C G A C T C A T G A T G C T G A C
C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C A C G T A C G T A C G T A C G T

THAP1/MA0597.1/Jaspar

Match Rank:2
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GCCCTTAACHGCC
CTGCCCGCA------
 A C G T A C G T A C T G A T G C G A T C G T A C C G A T A C G T G C T A G T C A G T A C G A C T C A T G A T G C T G A C
A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A A C G T A C G T A C G T A C G T A C G T A C G T

MYBL1/MA0776.1/Jaspar

Match Rank:3
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GCCCTTAACHGCC
ACCGTTAACGGT-
 A C T G A T G C G A T C G T A C C G A T A C G T G C T A G T C A G T A C G A C T C A T G A T G C T G A C
C T G A T G A C T A G C T C A G G A C T G C A T C G T A T C G A G T A C A T C G C A T G G A C T A C G T

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:4
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GCCCTTAACHGCC
BCMATTAG-----
 A C T G A T G C G A T C G T A C C G A T A C G T G C T A G T C A G T A C G A C T C A T G A T G C T G A C
A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G A C G T A C G T A C G T A C G T A C G T

YY2/MA0748.1/Jaspar

Match Rank:5
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----GCCCTTAACHGCC
GTCCGCCATTA------
 A C G T A C G T A C G T A C G T A C T G A T G C G A T C G T A C C G A T A C G T G C T A G T C A G T A C G A C T C A T G A T G C T G A C
C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A A C G T A C G T A C G T A C G T A C G T A C G T

PH0158.1_Rhox11_2/Jaspar

Match Rank:6
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GCCCTTAACHGCC----
TCNCTTTACAGCGNNNT
 A C T G A T G C G A T C G T A C C G A T A C G T G C T A G T C A G T A C G A C T C A T G A T G C T G A C A C G T A C G T A C G T A C G T
C G A T A G T C A T G C G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G G A T C C T A G C A G T G T A C A G T C C G A T

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:7
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GCCCTTAACHGCC
TGACCTTGACCT--
 A C G T A C T G A T G C G A T C G T A C C G A T A C G T G C T A G T C A G T A C G A C T C A T G A T G C T G A C
G A C T T C A G T G C A A G T C A G T C G A C T A C G T T A C G C G T A G T A C G A T C G A C T A C G T A C G T

MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer

Match Rank:8
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:GCCCTTAACHGCC
-----YAACBGCC
 A C T G A T G C G A T C G T A C C G A T A C G T G C T A G T C A G T A C G A C T C A T G A T G C T G A C
A C G T A C G T A C G T A C G T A C G T A G C T C G T A C G T A A G T C A G T C A C T G G A T C G A T C

PB0137.1_Irf3_2/Jaspar

Match Rank:9
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----GCCCTTAACHGCC
NNGCACCTTTCTCC---
 A C G T A C G T A C G T A C G T A C T G A T G C G A T C G T A C C G A T A C G T G C T A G T C A G T A C G A C T C A T G A T G C T G A C
A G C T G A T C T C A G T A G C G C T A A T G C T A G C G C A T C G A T G C A T G A T C G C A T G T A C G A T C A C G T A C G T A C G T

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:10
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:GCCCTTAACHGCC
-YCATTAMC----
 A C T G A T G C G A T C G T A C C G A T A C G T G C T A G T C A G T A C G A C T C A T G A T G C T G A C
A C G T A G C T T G A C C G T A A C G T A C G T C G T A G T C A T G A C A C G T A C G T A C G T A C G T