Information for 18-CATCCMTCCMTRY (Motif 38)

A G T C C G T A A C G T A T G C A G T C G T C A A C G T A G T C A G T C G T C A A C G T C T G A A G T C
Reverse Opposite:
C T A G A G C T C G T A A C G T A C T G C T A G C G T A A C G T A C T G A T C G C G T A A C G T A C T G
p-value:1e-8
log p-value:-1.904e+01
Information Content per bp:1.873
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.73%
Number of Background Sequences with motif4.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets46.6 +/- 14.3bp
Average Position of motif in Background47.9 +/- 27.9bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:1
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CATCCMTCCMTRY
GYCATCMATCAT---
 A C G T A C G T A G T C C G T A A C G T A T G C A G T C G T C A A C G T A G T C A G T C G T C A A C G T C T G A A G T C
T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T A C G T A C G T A C G T

PH0134.1_Pbx1/Jaspar

Match Rank:2
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CATCCMTCCMTRY---
TCACCCATCAATAAACA
 A C G T A G T C C G T A A C G T A T G C A G T C G T C A A C G T A G T C A G T C G T C A A C G T C T G A A G T C A C G T A C G T A C G T
G A C T A G T C C G T A G A T C G T A C T G A C C T G A C G A T G T A C G T C A G C T A C G A T G T A C G C T A C G A T T G A C T G C A

E2F6/MA0471.1/Jaspar

Match Rank:3
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CATCCMTCCMTRY
NCTTCCCGCCC---
 A C G T A G T C C G T A A C G T A T G C A G T C G T C A A C G T A G T C A G T C G T C A A C G T C T G A A G T C
A G T C A G T C A G C T A C G T A T G C A G T C A G T C C A T G A G T C A G T C G A T C A C G T A C G T A C G T

PB0028.1_Hbp1_1/Jaspar

Match Rank:4
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--CATCCMTCCMTRY-
NNCATTCATTCATNNN
 A C G T A C G T A G T C C G T A A C G T A T G C A G T C G T C A A C G T A G T C A G T C G T C A A C G T C T G A A G T C A C G T
T C G A G A C T G T A C C G T A A G C T G A C T T G A C C G T A C G A T G C A T A T G C C G T A C G A T G C T A A C T G C G A T

PBX1/MA0070.1/Jaspar

Match Rank:5
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CATCCMTCCMTRY
CCATCAATCAAA--
 A C G T A G T C C G T A A C G T A T G C A G T C G T C A A C G T A G T C A G T C G T C A A C G T C T G A A G T C
G A T C A G T C T C G A G A C T A G T C G T C A C G T A A C G T A G T C G C T A C G T A C G T A A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:6
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-CATCCMTCCMTRY-
SCAGYCADGCATGAC
 A C G T A G T C C G T A A C G T A T G C A G T C G T C A A C G T A G T C A G T C G T C A A C G T C T G A A G T C A C G T
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:7
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-CATCCMTCCMTRY
TCATCAATCA----
 A C G T A G T C C G T A A C G T A T G C A G T C G T C A A C G T A G T C A G T C G T C A A C G T C T G A A G T C
G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A A C G T A C G T A C G T A C G T

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:8
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---CATCCMTCCMTRY
RGCCATYAATCA----
 A C G T A C G T A C G T A G T C C G T A A C G T A T G C A G T C G T C A A C G T A G T C A G T C G T C A A C G T C T G A A G T C
C T A G T A C G G A T C T G A C T C G A A C G T G A C T G C T A T C G A A G C T G A T C G C T A A C G T A C G T A C G T A C G T

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-CATCCMTCCMTRY--
GCAGCCAAGCGTGACN
 A C G T A G T C C G T A A C G T A T G C A G T C G T C A A C G T A G T C A G T C G T C A A C G T C T G A A G T C A C G T A C G T
A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C

Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.53
Offset:1
Orientation:forward strand
Alignment:CATCCMTCCMTRY
-ATCACCCCAT--
 A G T C C G T A A C G T A T G C A G T C G T C A A C G T A G T C A G T C G T C A A C G T C T G A A G T C
A C G T T C G A G C A T A T G C C T G A A T G C T A G C A G T C G T A C T C G A A G C T A C G T A C G T