Information for 4-AGAGTATAAG (Motif 20)

C G T A A T C G C G T A C T A G C G A T C T G A A C G T C G T A C G T A A C T G
Reverse Opposite:
A G T C A C G T C G A T G T C A A G C T C G T A G A T C A C G T A T G C C G A T
p-value:1e-10
log p-value:-2.495e+01
Information Content per bp:1.809
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.90%
Number of Background Sequences with motif61.7
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets44.6 +/- 25.9bp
Average Position of motif in Background49.6 +/- 28.6bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-AGAGTATAAG-
GAAAGTGAAAGT
 A C G T C G T A A T C G C G T A C T A G C G A T C T G A A C G T C G T A C G T A A C T G A C G T
T C A G C G T A T G C A C T G A C T A G C G A T C T A G G C T A T C G A C G T A A C T G A G C T

PRDM1/MA0508.1/Jaspar

Match Rank:2
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--AGAGTATAAG---
AGAAAGTGAAAGTGA
 A C G T A C G T C G T A A T C G C G T A C T A G C G A T C T G A A C G T C G T A C G T A A C T G A C G T A C G T A C G T
C G T A C T A G C T G A T C G A C T G A C T A G C A G T C T A G C G T A C T G A C G T A T C A G A C G T C T A G C T G A

PB0174.1_Sox30_2/Jaspar

Match Rank:3
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--AGAGTATAAG----
TAAGATTATAATACGG
 A C G T A C G T C G T A A T C G C G T A C T A G C G A T C T G A A C G T C G T A C G T A A C T G A C G T A C G T A C G T A C G T
G A C T G T C A C G T A A C T G G T C A C G A T A G C T G T C A A C G T T C G A C G T A C A G T T G C A T A G C T A C G T A C G

HLTF/MA0109.1/Jaspar

Match Rank:4
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:AGAGTATAAG---
---NNATAAGGNN
 C G T A A T C G C G T A C T A G C G A T C T G A A C G T C G T A C G T A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T C G T A A C G T G T C A G C A T C G T A C G T A A C T G A C T G C G A T G C A T

Spz1/MA0111.1/Jaspar

Match Rank:5
Score:0.55
Offset:0
Orientation:forward strand
Alignment:AGAGTATAAG-
AGGGTAACAGC
 C G T A A T C G C G T A C T A G C G A T C T G A A C G T C G T A C G T A A C T G A C G T
C T G A A T C G C T A G A C T G C A G T C G T A C G T A T A G C C T G A A C T G T A G C

PB0079.1_Sry_1/Jaspar

Match Rank:6
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--AGAGTATAAG----
NANTATTATAATTNNN
 A C G T A C G T C G T A A T C G C G T A C T A G C G A T C T G A A C G T C G T A C G T A A C T G A C G T A C G T A C G T A C G T
A C T G G C T A G C T A G A C T C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C G A T G T C A C G A T T G C A

Crx/MA0467.1/Jaspar

Match Rank:7
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-AGAGTATAAG
AAGAGGATTAG
 A C G T C G T A A T C G C G T A C T A G C G A T C T G A A C G T C G T A C G T A A C T G
T C G A C T G A C T A G T C G A C T A G A C T G G T C A A C G T A G C T C G T A C T A G

NKX3-2/MA0122.2/Jaspar

Match Rank:8
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:AGAGTATAAG----
-----TTAAGTGGN
 C G T A A T C G C G T A C T A G C G A T C T G A A C G T C G T A C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G A C T C G A T C T G A T C G A C A T G C G A T C T A G A T C G A G C T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:9
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:AGAGTATAAG--
TGAGTGACAGSC
 C G T A A T C G C G T A C T A G C G A T C T G A A C G T C G T A C G T A A C T G A C G T A C G T
C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C

Nkx2-5/MA0063.1/Jaspar

Match Rank:10
Score:0.52
Offset:5
Orientation:forward strand
Alignment:AGAGTATAAG--
-----TTAATTG
 C G T A A T C G C G T A C T A G C G A T C T G A A C G T C G T A C G T A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G A T A G C T C G T A C G T A A C G T G C A T C A T G