Information for 16-TGYMCTRCTTATGCYY (Motif 19)

A C G T A C T G G A T C G T C A A G T C A C G T C T A G A G T C A C G T A C G T C G T A A C G T A C T G A G T C A G C T A G C T
Reverse Opposite:
C T G A C T G A C T A G A G T C C G T A A C G T C G T A C G T A A C T G G A T C C G T A A C T G A C G T C T A G A G T C G T C A
p-value:1e-11
log p-value:-2.594e+01
Information Content per bp:1.863
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.73%
Number of Background Sequences with motif0.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets57.8 +/- 21.9bp
Average Position of motif in Background64.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORA(var.2)/MA0072.1/Jaspar

Match Rank:1
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-TGYMCTRCTTATGCYY
TTGACCTANTTATN---
 A C G T A C G T A C T G G A T C G T C A A G T C A C G T C T A G A G T C A C G T A C G T C G T A A C G T A C T G A G T C A G C T A G C T
A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A A C G T A C G T A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:2
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:TGYMCTRCTTATGCYY
TGACCTARTT------
 A C G T A C T G G A T C G T C A A G T C A C G T C T A G A G T C A C G T A C G T C G T A A C G T A C T G A G T C A G C T A G C T
A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T A C G T A C G T A C G T A C G T A C G T A C G T

BHLHE22/MA0818.1/Jaspar

Match Rank:3
Score:0.52
Offset:5
Orientation:forward strand
Alignment:TGYMCTRCTTATGCYY
-----ACCATATGTT-
 A C G T A C T G G A T C G T C A A G T C A C G T C T A G A G T C A C G T A C G T C G T A A C G T A C T G A G T C A G C T A G C T
A C G T A C G T A C G T A C G T A C G T T C G A T G A C G T A C C T G A A G C T G T C A G A C T A C T G A G C T G A C T A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:4
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-TGYMCTRCTTATGCYY-
BTGACCTCTNNHTGACCY
 A C G T A C G T A C T G G A T C G T C A A G T C A C G T C T A G A G T C A C G T A C G T C G T A A C G T A C T G A G T C A G C T A G C T A C G T
A T C G A C G T A T C G T G C A G T A C A G T C A G C T A T G C C G A T T A C G A T G C G T A C G A C T T A C G T G C A G T A C G A T C A G C T

Bhlha15/MA0607.1/Jaspar

Match Rank:5
Score:0.52
Offset:6
Orientation:reverse strand
Alignment:TGYMCTRCTTATGCYY
------ACATATGG--
 A C G T A C T G G A T C G T C A A G T C A C G T C T A G A G T C A C G T A C G T C G T A A C G T A C T G A G T C A G C T A G C T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A A G T C C G T A A C G T G T C A A C G T A C T G A T C G A C G T A C G T

LBX1/MA0618.1/Jaspar

Match Rank:6
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:TGYMCTRCTTATGCYY
----CTAATTAA----
 A C G T A C T G G A T C G T C A A G T C A C G T C T A G A G T C A C G T A C G T C G T A A C G T A C T G A G T C A G C T A G C T
A C G T A C G T A C G T A C G T T A G C A G C T G C T A C T G A A C G T A C G T C T G A G C T A A C G T A C G T A C G T A C G T

PH0148.1_Pou3f3/Jaspar

Match Rank:7
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:TGYMCTRCTTATGCYY-----
----TNNATTATGCATANNTT
 A C G T A C T G G A T C G T C A A G T C A C G T C T A G A G T C A C G T A C G T C G T A A C G T A C T G A G T C A G C T A G C T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C A T G C A T G A C T G T C A C G A T C G A T C G T A A G C T C A T G G T A C C T G A C G A T C T G A G C A T G A C T C G A T C G A T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:8
Score:0.50
Offset:6
Orientation:reverse strand
Alignment:TGYMCTRCTTATGCYY
------GHATATKCAT
 A C G T A C T G G A T C G T C A A G T C A C G T C T A G A G T C A C G T A C G T C G T A A C G T A C T G A G T C A G C T A G C T
A C G T A C G T A C G T A C G T A C G T A C G T C T A G G T A C C G T A G A C T C T G A C G A T C A T G G A T C C G T A C G A T

Atoh1/MA0461.2/Jaspar

Match Rank:9
Score:0.50
Offset:5
Orientation:forward strand
Alignment:TGYMCTRCTTATGCYY
-----AACATATGTT-
 A C G T A C T G G A T C G T C A A G T C A C G T C T A G A G T C A C G T A C G T C G T A A C G T A C T G A G T C A G C T A G C T
A C G T A C G T A C G T A C G T A C G T T C G A T G C A T G A C T C G A C A G T G T C A C G A T C A T G A C G T G A C T A C G T

BHLHE23/MA0817.1/Jaspar

Match Rank:10
Score:0.50
Offset:4
Orientation:reverse strand
Alignment:TGYMCTRCTTATGCYY
----NAACATATGTTT
 A C G T A C T G G A T C G T C A A G T C A C G T C T A G A G T C A C G T A C G T C G T A A C G T A C T G A G T C A G C T A G C T
A C G T A C G T A C G T A C G T G C T A C T G A T G C A T G A C C T G A A C G T T C G A G A C T A C T G A C G T A G C T G C A T