Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 769)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 47557)	% of Background Sequences with Motif
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-76	-1.771e+02	0.0000	221.0	28.74%	3191.1	6.71%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-76	-1.768e+02	0.0000	198.0	25.75%	2528.3	5.32%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-73	-1.692e+02	0.0000	200.0	26.01%	2704.9	5.69%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-63	-1.454e+02	0.0000	176.0	22.89%	2407.6	5.06%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-60	-1.392e+02	0.0000	106.0	13.78%	798.3	1.68%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-57	-1.321e+02	0.0000	160.0	20.81%	2173.5	4.57%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-49	-1.141e+02	0.0000	93.0	12.09%	768.3	1.62%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-23	-5.444e+01	0.0000	73.0	9.49%	1067.5	2.25%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-23	-5.442e+01	0.0000	108.0	14.04%	2189.2	4.60%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-22	-5.207e+01	0.0000	77.0	10.01%	1231.1	2.59%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-22	-5.080e+01	0.0000	86.0	11.18%	1541.3	3.24%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-21	-4.936e+01	0.0000	83.0	10.79%	1479.8	3.11%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-20	-4.832e+01	0.0000	55.0	7.15%	683.5	1.44%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-20	-4.825e+01	0.0000	75.0	9.75%	1252.2	2.63%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-20	-4.743e+01	0.0000	119.0	15.47%	2819.0	5.93%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-20	-4.698e+01	0.0000	105.0	13.65%	2307.8	4.85%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-19	-4.454e+01	0.0000	88.0	11.44%	1774.0	3.73%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-19	-4.446e+01	0.0000	45.0	5.85%	492.9	1.04%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-18	-4.293e+01	0.0000	97.0	12.61%	2144.1	4.51%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-18	-4.278e+01	0.0000	28.0	3.64%	169.3	0.36%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-17	-4.104e+01	0.0000	83.0	10.79%	1700.9	3.58%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-15	-3.623e+01	0.0000	83.0	10.79%	1850.0	3.89%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-15	-3.508e+01	0.0000	61.0	7.93%	1119.8	2.35%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-14	-3.417e+01	0.0000	158.0	20.55%	5103.1	10.73%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-14	-3.417e+01	0.0000	39.0	5.07%	491.9	1.03%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-14	-3.345e+01	0.0000	67.0	8.71%	1365.5	2.87%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-14	-3.340e+01	0.0000	77.0	10.01%	1724.5	3.63%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-14	-3.301e+01	0.0000	67.0	8.71%	1378.1	2.90%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-13	-3.144e+01	0.0000	31.0	4.03%	334.9	0.70%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-13	-3.083e+01	0.0000	55.0	7.15%	1032.7	2.17%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-12	-2.963e+01	0.0000	129.0	16.78%	4045.8	8.51%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-10	-2.359e+01	0.0000	19.0	2.47%	163.6	0.34%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-9	-2.217e+01	0.0000	15.0	1.95%	101.8	0.21%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-9	-2.110e+01	0.0000	29.0	3.77%	448.0	0.94%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-8	-2.047e+01	0.0000	17.0	2.21%	154.0	0.32%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-7	-1.816e+01	0.0000	84.0	10.92%	2702.9	5.68%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-7	-1.725e+01	0.0000	12.0	1.56%	87.8	0.18%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e-7	-1.722e+01	0.0000	76.0	9.88%	2401.6	5.05%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e-7	-1.678e+01	0.0000	105.0	13.65%	3776.6	7.94%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-7	-1.654e+01	0.0000	59.0	7.67%	1702.1	3.58%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-6	-1.422e+01	0.0000	12.0	1.56%	116.5	0.24%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-6	-1.404e+01	0.0000	12.0	1.56%	118.7	0.25%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-6	-1.389e+01	0.0000	51.0	6.63%	1501.6	3.16%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-5	-1.373e+01	0.0000	63.0	8.19%	2035.4	4.28%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-5	-1.326e+01	0.0000	54.0	7.02%	1665.3	3.50%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e-4	-1.076e+01	0.0002	65.0	8.45%	2335.0	4.91%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e-4	-1.074e+01	0.0002	219.0	28.48%	10516.0	22.12%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-3	-9.133e+00	0.0008	44.0	5.72%	1476.2	3.10%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-3	-8.881e+00	0.0010	42.0	5.46%	1402.6	2.95%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-3	-8.651e+00	0.0013	32.0	4.16%	973.4	2.05%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-3	-8.617e+00	0.0013	29.0	3.77%	847.2	1.78%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-3	-8.303e+00	0.0017	17.0	2.21%	385.3	0.81%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-3	-8.294e+00	0.0017	24.0	3.12%	656.4	1.38%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-3	-8.197e+00	0.0019	23.0	2.99%	621.0	1.31%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-3	-7.892e+00	0.0025	52.0	6.76%	1947.5	4.10%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-3	-7.750e+00	0.0028	116.0	15.08%	5271.8	11.09%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-3	-7.733e+00	0.0028	59.0	7.67%	2304.2	4.85%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-3	-7.388e+00	0.0039	112.0	14.56%	5107.2	10.74%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-2	-6.559e+00	0.0087	45.0	5.85%	1724.8	3.63%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-2	-6.293e+00	0.0112	15.0	1.95%	384.1	0.81%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-2	-5.847e+00	0.0172	81.0	10.53%	3661.3	7.70%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-2	-5.713e+00	0.0194	151.0	19.64%	7560.3	15.90%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-2	-5.571e+00	0.0220	37.0	4.81%	1422.7	2.99%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-2	-5.199e+00	0.0314	39.0	5.07%	1556.8	3.27%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-2	-5.157e+00	0.0323	47.0	6.11%	1965.2	4.13%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-2	-5.150e+00	0.0323	118.0	15.34%	5808.9	12.22%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-2	-5.119e+00	0.0325	11.0	1.43%	275.0	0.58%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-2	-5.109e+00	0.0325	23.0	2.99%	793.0	1.67%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e-2	-5.091e+00	0.0325	16.0	2.08%	481.2	1.01%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e-2	-4.870e+00	0.0399	40.0	5.20%	1640.4	3.45%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e-2	-4.848e+00	0.0402	33.0	4.29%	1292.9	2.72%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-2	-4.722e+00	0.0450	65.0	8.45%	2966.3	6.24%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-2	-4.701e+00	0.0453	15.0	1.95%	460.0	0.97%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e-2	-4.693e+00	0.0453	54.0	7.02%	2385.6	5.02%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-1	-4.602e+00	0.0487	40.0	5.20%	1669.3	3.51%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-1	-4.597e+00	0.0487	18.0	2.34%	598.8	1.26%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e-1	-4.391e+00	0.0586	22.0	2.86%	798.0	1.68%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-1	-4.300e+00	0.0633	44.0	5.72%	1911.7	4.02%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-1	-4.096e+00	0.0767	46.0	5.98%	2042.3	4.30%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e-1	-4.014e+00	0.0822	62.0	8.06%	2912.5	6.13%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-1	-3.979e+00	0.0840	7.0	0.91%	164.5	0.35%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e-1	-3.950e+00	0.0855	7.0	0.91%	166.0	0.35%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e-1	-3.859e+00	0.0924	57.0	7.41%	2665.8	5.61%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-1	-3.749e+00	0.1020	14.0	1.82%	471.2	0.99%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-1	-3.741e+00	0.1020	41.0	5.33%	1825.8	3.84%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-1	-3.643e+00	0.1108	18.0	2.34%	666.3	1.40%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-1	-3.580e+00	0.1166	192.0	24.97%	10467.4	22.01%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e-1	-3.564e+00	0.1171	9.0	1.17%	261.3	0.55%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-1	-3.440e+00	0.1311	24.0	3.12%	980.1	2.06%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-1	-3.343e+00	0.1428	9.0	1.17%	272.3	0.57%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-1	-3.065e+00	0.1867	179.0	23.28%	9860.9	20.74%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-1	-3.065e+00	0.1867	6.0	0.78%	159.7	0.34%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-1	-3.047e+00	0.1867	40.0	5.20%	1870.9	3.93%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-1	-3.027e+00	0.1876	51.0	6.63%	2475.0	5.21%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-1	-2.994e+00	0.1920	72.0	9.36%	3656.1	7.69%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e-1	-2.930e+00	0.2025	3.0	0.39%	53.0	0.11%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e-1	-2.895e+00	0.2074	15.0	1.95%	582.1	1.22%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-1	-2.881e+00	0.2084	47.0	6.11%	2280.6	4.80%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-1	-2.848e+00	0.2131	25.0	3.25%	1097.0	2.31%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e-1	-2.847e+00	0.2131	41.0	5.33%	1956.5	4.11%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-1	-2.846e+00	0.2131	4.0	0.52%	89.5	0.19%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-1	-2.815e+00	0.2139	48.0	6.24%	2347.8	4.94%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-1	-2.773e+00	0.2208	35.0	4.55%	1641.7	3.45%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e-1	-2.770e+00	0.2208	1.0	0.13%	4.9	0.01%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-1	-2.759e+00	0.2208	34.0	4.42%	1589.1	3.34%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-1	-2.735e+00	0.2229	25.0	3.25%	1111.5	2.34%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-1	-2.726e+00	0.2229	15.0	1.95%	597.9	1.26%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e-1	-2.714e+00	0.2233	9.0	1.17%	308.9	0.65%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-1	-2.695e+00	0.2255	14.0	1.82%	550.2	1.16%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e-1	-2.644e+00	0.2352	40.0	5.20%	1935.8	4.07%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-1	-2.602e+00	0.2430	17.0	2.21%	710.8	1.49%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-1	-2.563e+00	0.2506	16.0	2.08%	663.7	1.40%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-1	-2.556e+00	0.2506	56.0	7.28%	2845.6	5.98%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-1	-2.554e+00	0.2506	17.0	2.21%	715.7	1.51%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-1	-2.526e+00	0.2533	17.0	2.21%	718.7	1.51%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e-1	-2.459e+00	0.2684	35.0	4.55%	1691.9	3.56%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-1	-2.377e+00	0.2888	42.0	5.46%	2094.9	4.41%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-1	-2.371e+00	0.2888	82.0	10.66%	4379.3	9.21%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e-1	-2.361e+00	0.2888	50.0	6.50%	2547.1	5.36%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-1	-2.356e+00	0.2888	41.0	5.33%	2042.8	4.30%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-1	-2.339e+00	0.2901	30.0	3.90%	1436.7	3.02%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-1	-2.307e+00	0.2972	17.0	2.21%	742.0	1.56%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-1	-2.304e+00	0.2972	23.0	2.99%	1061.7	2.23%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-2.196e+00	0.3265	59.0	7.67%	3097.6	6.51%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-2.168e+00	0.3332	21.0	2.73%	972.8	2.05%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-2.155e+00	0.3348	75.0	9.75%	4032.1	8.48%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-2.152e+00	0.3348	3.0	0.39%	73.0	0.15%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-2.145e+00	0.3348	50.0	6.50%	2594.1	5.46%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-2.139e+00	0.3348	13.0	1.69%	552.9	1.16%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-2.116e+00	0.3374	6.0	0.78%	206.8	0.43%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-2.114e+00	0.3374	34.0	4.42%	1696.1	3.57%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-2.108e+00	0.3374	34.0	4.42%	1697.5	3.57%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-2.081e+00	0.3416	69.0	8.97%	3704.1	7.79%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-2.060e+00	0.3461	8.0	1.04%	306.5	0.64%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-2.040e+00	0.3507	24.0	3.12%	1154.4	2.43%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-2.039e+00	0.3507	21.0	2.73%	990.1	2.08%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-1.993e+00	0.3620	7.0	0.91%	262.9	0.55%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-1.987e+00	0.3620	11.0	1.43%	464.2	0.98%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-1.984e+00	0.3620	25.0	3.25%	1218.4	2.56%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-1.982e+00	0.3620	4.0	0.52%	122.3	0.26%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-1.937e+00	0.3723	15.0	1.95%	680.1	1.43%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-1.899e+00	0.3837	25.0	3.25%	1232.2	2.59%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-1.892e+00	0.3837	14.0	1.82%	632.5	1.33%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-1.870e+00	0.3895	6.0	0.78%	222.7	0.47%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-1.869e+00	0.3895	29.0	3.77%	1461.5	3.07%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-1.855e+00	0.3900	86.0	11.18%	4767.2	10.03%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-1.842e+00	0.3926	4.0	0.52%	129.2	0.27%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-1.794e+00	0.4092	33.0	4.29%	1702.8	3.58%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-1.736e+00	0.4307	52.0	6.76%	2810.8	5.91%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-1.661e+00	0.4609	4.0	0.52%	139.4	0.29%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-1.650e+00	0.4630	3.0	0.39%	93.3	0.20%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e0	-1.633e+00	0.4679	36.0	4.68%	1909.3	4.02%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-1.626e+00	0.4679	12.0	1.56%	557.0	1.17%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-1.589e+00	0.4825	41.0	5.33%	2209.5	4.65%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-1.579e+00	0.4840	6.0	0.78%	244.1	0.51%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-1.550e+00	0.4951	8.0	1.04%	351.6	0.74%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-1.546e+00	0.4951	62.0	8.06%	3452.2	7.26%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-1.515e+00	0.5062	4.0	0.52%	148.6	0.31%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-1.478e+00	0.5220	1.0	0.13%	16.5	0.03%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-1.477e+00	0.5220	205.0	26.66%	12091.5	25.43%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-1.455e+00	0.5278	9.0	1.17%	416.0	0.87%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-1.434e+00	0.5357	34.0	4.42%	1841.5	3.87%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-1.430e+00	0.5357	18.0	2.34%	920.9	1.94%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-1.427e+00	0.5357	5.0	0.65%	205.6	0.43%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-1.403e+00	0.5425	5.0	0.65%	207.2	0.44%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-1.398e+00	0.5425	4.0	0.52%	156.4	0.33%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-1.387e+00	0.5444	12.0	1.56%	589.5	1.24%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-1.386e+00	0.5444	6.0	0.78%	261.0	0.55%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-1.383e+00	0.5444	3.0	0.39%	107.9	0.23%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-1.373e+00	0.5444	8.0	1.04%	370.7	0.78%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-1.341e+00	0.5570	23.0	2.99%	1224.3	2.57%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-1.286e+00	0.5850	1.0	0.13%	20.6	0.04%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-1.248e+00	0.6039	31.0	4.03%	1713.5	3.60%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-1.244e+00	0.6039	7.0	0.91%	330.5	0.70%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-1.201e+00	0.6260	71.0	9.23%	4114.8	8.65%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-1.172e+00	0.6406	50.0	6.50%	2865.4	6.03%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-1.169e+00	0.6406	8.0	1.04%	395.3	0.83%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-1.147e+00	0.6497	80.0	10.40%	4680.8	9.84%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-1.141e+00	0.6497	40.0	5.20%	2278.1	4.79%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-1.136e+00	0.6497	15.0	1.95%	802.0	1.69%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-1.126e+00	0.6520	91.0	11.83%	5355.9	11.26%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-1.122e+00	0.6520	22.0	2.86%	1215.0	2.56%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-1.119e+00	0.6520	48.0	6.24%	2765.0	5.81%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-1.100e+00	0.6584	10.0	1.30%	519.5	1.09%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-1.097e+00	0.6584	59.0	7.67%	3434.0	7.22%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-1.063e+00	0.6757	18.0	2.34%	993.6	2.09%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-1.061e+00	0.6757	22.0	2.86%	1230.1	2.59%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-1.059e+00	0.6757	3.0	0.39%	129.7	0.27%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-1.046e+00	0.6768	33.0	4.29%	1890.3	3.98%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-1.019e+00	0.6913	6.0	0.78%	301.1	0.63%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-1.008e+00	0.6957	7.0	0.91%	360.1	0.76%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-9.980e-01	0.6988	83.0	10.79%	4933.4	10.38%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-9.914e-01	0.6999	2.0	0.26%	80.0	0.17%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-9.493e-01	0.7261	15.0	1.95%	841.3	1.77%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-9.465e-01	0.7261	32.0	4.16%	1863.0	3.92%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-9.411e-01	0.7261	18.0	2.34%	1023.0	2.15%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-9.255e-01	0.7323	7.0	0.91%	373.0	0.78%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-9.251e-01	0.7323	26.0	3.38%	1507.9	3.17%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e0	-9.242e-01	0.7323	8.0	1.04%	431.1	0.91%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-9.096e-01	0.7329	16.0	2.08%	910.4	1.91%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-8.975e-01	0.7381	27.0	3.51%	1576.1	3.31%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-8.730e-01	0.7527	6.0	0.78%	321.7	0.68%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-8.632e-01	0.7563	73.0	9.49%	4393.1	9.24%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e0	-8.632e-01	0.7563	2.0	0.26%	89.6	0.19%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-8.471e-01	0.7611	9.0	1.17%	505.0	1.06%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-8.462e-01	0.7611	6.0	0.78%	326.0	0.69%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-8.374e-01	0.7611	2.0	0.26%	91.8	0.19%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-8.374e-01	0.7611	2.0	0.26%	91.2	0.19%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-8.251e-01	0.7631	20.0	2.60%	1174.3	2.47%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-8.202e-01	0.7633	6.0	0.78%	329.7	0.69%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-7.893e-01	0.7835	14.0	1.82%	819.3	1.72%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-7.710e-01	0.7942	9.0	1.17%	520.0	1.09%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-7.627e-01	0.7971	3.0	0.39%	157.8	0.33%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e0	-7.624e-01	0.7971	65.0	8.45%	3957.2	8.32%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-7.618e-01	0.7971	70.0	9.10%	4265.1	8.97%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-7.522e-01	0.7971	62.0	8.06%	3778.5	7.95%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-7.257e-01	0.8119	83.0	10.79%	5088.1	10.70%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-7.235e-01	0.8119	6.0	0.78%	345.6	0.73%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-6.994e-01	0.8259	26.0	3.38%	1584.9	3.33%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-6.906e-01	0.8294	1.0	0.13%	43.6	0.09%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-6.762e-01	0.8376	26.0	3.38%	1593.6	3.35%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-6.747e-01	0.8376	1.0	0.13%	44.1	0.09%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-6.747e-01	0.8376	1.0	0.13%	44.1	0.09%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-6.658e-01	0.8376	34.0	4.42%	2093.2	4.40%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-6.596e-01	0.8376	4.0	0.52%	232.2	0.49%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-6.383e-01	0.8507	25.0	3.25%	1546.0	3.25%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-6.366e-01	0.8507	56.0	7.28%	3473.6	7.31%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-6.285e-01	0.8516	216.0	28.09%	13394.5	28.17%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-6.269e-01	0.8516	3.0	0.39%	174.8	0.37%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-6.215e-01	0.8516	8.0	1.04%	490.6	1.03%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-6.051e-01	0.8604	38.0	4.94%	2371.0	4.99%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-6.025e-01	0.8604	14.0	1.82%	872.6	1.84%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-5.998e-01	0.8604	27.0	3.51%	1687.5	3.55%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-5.991e-01	0.8604	195.0	25.36%	12124.3	25.50%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-5.908e-01	0.8604	37.0	4.81%	2316.5	4.87%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-5.899e-01	0.8604	43.0	5.59%	2691.5	5.66%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-5.823e-01	0.8604	7.0	0.91%	436.6	0.92%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-5.785e-01	0.8604	3.0	0.39%	182.0	0.38%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-5.775e-01	0.8604	37.0	4.81%	2323.6	4.89%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-5.526e-01	0.8728	3.0	0.39%	185.6	0.39%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-5.463e-01	0.8746	3.0	0.39%	186.4	0.39%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-5.409e-01	0.8757	13.0	1.69%	829.5	1.74%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-5.287e-01	0.8828	1.0	0.13%	56.0	0.12%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-5.256e-01	0.8828	40.0	5.20%	2540.2	5.34%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-5.144e-01	0.8883	14.0	1.82%	902.2	1.90%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-5.119e-01	0.8883	8.0	1.04%	518.3	1.09%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-5.091e-01	0.8883	64.0	8.32%	4057.6	8.53%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e0	-4.805e-01	0.9078	9.0	1.17%	592.3	1.25%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-4.724e-01	0.9115	56.0	7.28%	3582.1	7.53%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-4.656e-01	0.9140	5.0	0.65%	334.7	0.70%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-4.591e-01	0.9163	10.0	1.30%	665.0	1.40%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-4.555e-01	0.9163	9.0	1.17%	601.0	1.26%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-4.476e-01	0.9196	16.0	2.08%	1057.5	2.22%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-4.418e-01	0.9213	72.0	9.36%	4614.9	9.71%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-4.402e-01	0.9213	13.0	1.69%	866.5	1.82%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-4.384e-01	0.9213	1.0	0.13%	64.7	0.14%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-4.375e-01	0.9213	9.0	1.17%	606.9	1.28%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-4.375e-01	0.9213	9.0	1.17%	607.0	1.28%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-4.316e-01	0.9213	4.0	0.52%	275.8	0.58%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-4.186e-01	0.9213	7.0	0.91%	480.3	1.01%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-4.106e-01	0.9250	4.0	0.52%	280.1	0.59%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-4.079e-01	0.9250	2.0	0.26%	141.4	0.30%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-4.045e-01	0.9250	1.0	0.13%	68.3	0.14%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-4.034e-01	0.9250	15.0	1.95%	1012.5	2.13%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-4.001e-01	0.9250	125.0	16.25%	7986.4	16.80%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-3.841e-01	0.9320	12.0	1.56%	824.8	1.73%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-3.584e-01	0.9526	11.0	1.43%	769.8	1.62%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-3.445e-01	0.9624	17.0	2.21%	1173.2	2.47%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-3.411e-01	0.9624	16.0	2.08%	1109.1	2.33%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-3.381e-01	0.9624	3.0	0.39%	228.0	0.48%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-3.374e-01	0.9624	7.0	0.91%	508.5	1.07%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-3.355e-01	0.9624	24.0	3.12%	1638.0	3.44%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-3.355e-01	0.9624	18.0	2.34%	1244.6	2.62%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-3.224e-01	0.9624	2.0	0.26%	158.8	0.33%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-3.193e-01	0.9624	27.0	3.51%	1844.4	3.88%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-3.094e-01	0.9679	2.0	0.26%	161.4	0.34%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-2.869e-01	0.9863	45.0	5.85%	3040.7	6.39%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-2.787e-01	0.9909	107.0	13.91%	7012.1	14.75%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-2.713e-01	0.9947	9.0	1.17%	675.5	1.42%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-2.605e-01	1.0000	8.0	1.04%	611.3	1.29%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-2.463e-01	1.0000	1.0	0.13%	94.5	0.20%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-2.452e-01	1.0000	2.0	0.26%	178.3	0.37%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-2.249e-01	1.0000	129.0	16.78%	8497.7	17.87%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-2.237e-01	1.0000	23.0	2.99%	1658.1	3.49%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-2.229e-01	1.0000	2.0	0.26%	185.7	0.39%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-2.200e-01	1.0000	38.0	4.94%	2656.7	5.59%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-2.099e-01	1.0000	6.0	0.78%	495.7	1.04%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-2.056e-01	1.0000	8.0	1.04%	642.0	1.35%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-2.054e-01	1.0000	1.0	0.13%	104.8	0.22%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-1.999e-01	1.0000	2.0	0.26%	193.8	0.41%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-1.947e-01	1.0000	3.0	0.39%	276.9	0.58%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-1.944e-01	1.0000	15.0	1.95%	1141.6	2.40%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-1.922e-01	1.0000	42.0	5.46%	2954.5	6.21%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-1.731e-01	1.0000	29.0	3.77%	2115.3	4.45%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-1.727e-01	1.0000	19.0	2.47%	1437.5	3.02%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-1.698e-01	1.0000	2.0	0.26%	205.6	0.43%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-1.679e-01	1.0000	4.0	0.52%	368.4	0.77%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-1.630e-01	1.0000	2.0	0.26%	208.6	0.44%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-1.586e-01	1.0000	2.0	0.26%	210.6	0.44%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-1.579e-01	1.0000	7.0	0.91%	602.4	1.27%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-1.467e-01	1.0000	1.0	0.13%	123.4	0.26%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-1.404e-01	1.0000	10.0	1.30%	837.2	1.76%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-1.319e-01	1.0000	4.0	0.52%	391.5	0.82%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-1.310e-01	1.0000	7.0	0.91%	624.5	1.31%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-1.294e-01	1.0000	5.0	0.65%	472.1	0.99%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-1.203e-01	1.0000	11.0	1.43%	931.5	1.96%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-1.176e-01	1.0000	2.0	0.26%	232.8	0.49%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-1.162e-01	1.0000	18.0	2.34%	1437.8	3.02%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-1.133e-01	1.0000	149.0	19.38%	10049.0	21.13%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-1.131e-01	1.0000	1.0	0.13%	138.0	0.29%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-1.054e-01	1.0000	67.0	8.71%	4766.2	10.02%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-1.037e-01	1.0000	49.0	6.37%	3576.5	7.52%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-1.021e-01	1.0000	3.0	0.39%	331.3	0.70%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-1.020e-01	1.0000	9.0	1.17%	805.6	1.69%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-1.013e-01	1.0000	13.0	1.69%	1101.1	2.32%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-9.996e-02	1.0000	67.0	8.71%	4781.9	10.06%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-9.867e-02	1.0000	1.0	0.13%	147.0	0.31%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-9.739e-02	1.0000	3.0	0.39%	335.7	0.71%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-9.723e-02	1.0000	9.0	1.17%	811.4	1.71%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-9.075e-02	1.0000	2.0	0.26%	251.3	0.53%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-8.902e-02	1.0000	40.0	5.20%	3006.8	6.32%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-8.639e-02	1.0000	13.0	1.69%	1124.3	2.36%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-8.556e-02	1.0000	23.0	2.99%	1842.7	3.88%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-8.049e-02	1.0000	1.0	0.13%	158.5	0.33%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-7.305e-02	1.0000	16.0	2.08%	1368.1	2.88%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-7.292e-02	1.0000	2.0	0.26%	267.6	0.56%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-6.768e-02	1.0000	6.0	0.78%	619.6	1.30%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-5.951e-02	1.0000	3.0	0.39%	376.1	0.79%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-4.869e-02	1.0000	1.0	0.13%	188.0	0.40%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-4.869e-02	1.0000	1.0	0.13%	188.0	0.40%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-4.794e-02	1.0000	4.0	0.52%	484.2	1.02%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-4.691e-02	1.0000	20.0	2.60%	1728.7	3.64%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-4.555e-02	1.0000	51.0	6.63%	3906.2	8.22%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-4.193e-02	1.0000	1.0	0.13%	197.1	0.41%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-4.118e-02	1.0000	35.0	4.55%	2821.3	5.93%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-2.877e-02	1.0000	4.0	0.52%	529.4	1.11%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-2.859e-02	1.0000	93.0	12.09%	6848.9	14.40%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-2.391e-02	1.0000	4.0	0.52%	545.9	1.15%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-2.316e-02	1.0000	8.0	1.04%	897.0	1.89%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-2.244e-02	1.0000	66.0	8.58%	5090.4	10.71%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-1.516e-02	1.0000	2.0	0.26%	380.4	0.80%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-1.474e-02	1.0000	75.0	9.75%	5799.7	12.20%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-1.408e-02	1.0000	54.0	7.02%	4362.6	9.17%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e0	-1.315e-02	1.0000	23.0	2.99%	2143.6	4.51%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-4.119e-03	1.0000	63.0	8.19%	5232.5	11.00%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-3.359e-03	1.0000	8.0	1.04%	1091.3	2.30%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-1.269e-03	1.0000	4.0	0.52%	784.0	1.65%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-1.135e-03	1.0000	7.0	0.91%	1097.3	2.31%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-9.900e-05	1.0000	30.0	3.90%	3330.3	7.00%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-5.000e-06	1.0000	16.0	2.08%	2444.4	5.14%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	0.000e+00	1.0000	0.0	0.00%	15.6	0.03%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	0.000e+00	1.0000	0.0	0.00%	6.6	0.01%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	0.000e+00	1.0000	0.0	0.00%	60.9	0.13%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	0.000e+00	1.0000	0.0	0.00%	12.3	0.03%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	0.000e+00	1.0000	0.0	0.00%	108.7	0.23%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	0.000e+00	1.0000	0.0	0.00%	25.5	0.05%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	0.000e+00	1.0000	0.0	0.00%	46.4	0.10%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	0.000e+00	1.0000	0.0	0.00%	12.2	0.03%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	0.000e+00	1.0000	0.0	0.00%	126.3	0.27%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e0	0.000e+00	1.0000	0.0	0.00%	31.0	0.07%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	0.000e+00	1.0000	0.0	0.00%	23.8	0.05%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	1.4	0.00%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	0.000e+00	1.0000	0.0	0.00%	31.2	0.07%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	0.000e+00	1.0000	0.0	0.00%	11.9	0.03%