Information for 4-CCAGGCAGTCACCAGG (Motif 7)

T A G C A G T C C T G A A C T G A T C G A G T C C G T A T A C G A C G T A T G C C G T A A G T C A G T C C G T A A C T G C T A G
Reverse Opposite:
A G T C A G T C C G A T A C T G A C T G G C A T A T C G G T C A A G T C A C G T C T A G A T G C A G T C G A C T C T A G A C T G
p-value:1e-16
log p-value:-3.812e+01
Information Content per bp:1.787
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.04%
Number of Background Sequences with motif2.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets70.4 +/- 23.0bp
Average Position of motif in Background87.6 +/- 1.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer

Match Rank:1
Score:0.56
Offset:2
Orientation:forward strand
Alignment:CCAGGCAGTCACCAGG-
--TGACANARRCCAGRC
 T A G C A G T C C T G A A C T G A T C G A G T C C G T A T A C G A C G T A T G C C G T A A G T C A G T C C G T A A C T G C T A G A C G T
A C G T A C G T C G A T C T A G C T G A A T G C C T G A T C G A C G T A C T G A T C G A T A G C A G T C C G T A A C T G T C G A A T G C

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:2
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CCAGGCAGTCACCAGG
-AGGTCANTGACCTN-
 T A G C A G T C C T G A A C T G A T C G A G T C C G T A T A C G A C G T A T G C C G T A A G T C A G T C C G T A A C T G C T A G
A C G T T C G A C A T G C A T G A C G T A T G C T C G A C T G A A G C T T A C G T G C A G T A C G A T C A G C T A G T C A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:3
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CCAGGCAGTCACCAGG
SCTGTCAVTCAV----
 T A G C A G T C C T G A A C T G A T C G A G T C C G T A T A C G A C G T A T G C C G T A A G T C A G T C C G T A A C T G C T A G
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A A C G T A C G T A C G T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:4
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CCAGGCAGTCACCAGG
ACTAGCCAATCA-----
 A C G T T A G C A G T C C T G A A C T G A T C G A G T C C G T A T A C G A C G T A T G C C G T A A G T C A G T C C G T A A C T G C T A G
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T A C G T A C G T A C G T A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CCAGGCAGTCACCAGG
NCTGTCAATCAN----
 T A G C A G T C C T G A A C T G A T C G A G T C C G T A T A C G A C G T A T G C C G T A A G T C A G T C C G T A A C T G C T A G
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A A C G T A C G T A C G T A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:6
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-CCAGGCAGTCACCAGG
GSCTGTCACTCA-----
 A C G T T A G C A G T C C T G A A C T G A T C G A G T C C G T A T A C G A C G T A T G C C G T A A G T C A G T C C G T A A C T G C T A G
C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A A C G T A C G T A C G T A C G T A C G T

ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer

Match Rank:7
Score:0.50
Offset:0
Orientation:forward strand
Alignment:CCAGGCAGTCACCAGG
ACAGGAAGTG------
 T A G C A G T C C T G A A C T G A T C G A G T C C G T A T A C G A C G T A T G C C G T A A G T C A G T C C G T A A C T G C T A G
T C G A T A G C G T C A A C T G A C T G C G T A C G T A C T A G A G C T T C A G A C G T A C G T A C G T A C G T A C G T A C G T

NFY(CCAAT)/Promoter/Homer

Match Rank:8
Score:0.50
Offset:2
Orientation:forward strand
Alignment:CCAGGCAGTCACCAGG
--AGCCAATCGG----
 T A G C A G T C C T G A A C T G A T C G A G T C C G T A T A C G A C G T A T G C C G T A A G T C A G T C C G T A A C T G C T A G
A C G T A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G A C G T A C G T A C G T A C G T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.50
Offset:5
Orientation:reverse strand
Alignment:CCAGGCAGTCACCAGG-
-----CTGTTGCTAGGS
 T A G C A G T C C T G A A C T G A T C G A G T C C G T A T A C G A C G T A T G C C G T A A G T C A G T C C G T A A C T G C T A G A C G T
A C G T A C G T A C G T A C G T A C G T A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:10
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-CCAGGCAGTCACCAGG
NACAGGAAAT-------
 A C G T T A G C A G T C C T G A A C T G A T C G A G T C C G T A T A C G A C G T A T G C C G T A A G T C A G T C C G T A A C T G C T A G
T A G C C T G A T A G C G T C A A C T G A C T G C G T A C G T A C T G A A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T