Information for 4-TGGCTCMCTGCCA (Motif 4)

A C G T A C T G A C T G A G T C C G A T A T G C T G C A G T A C C G A T A T C G A G T C A G T C C G T A
Reverse Opposite:
C G A T A C T G C T A G A T G C C G T A A C T G A C G T A T C G C G T A A C T G A G T C A G T C G T C A
p-value:1e-13
log p-value:-3.106e+01
Information Content per bp:1.782
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif2.68%
Number of Background Sequences with motif156.1
Percentage of Background Sequences with motif0.32%
Average Position of motif in Targets52.8 +/- 24.5bp
Average Position of motif in Background49.1 +/- 28.9bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.88
Offset:-1
Orientation:forward strand
Alignment:-TGGCTCMCTGCCA
CTGGCAGNCTGCCA
 A C G T A C G T A C T G A C T G A G T C C G A T A T G C T G C A G T A C C G A T A T C G A G T C A G T C C G T A
A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.82
Offset:-2
Orientation:forward strand
Alignment:--TGGCTCMCTGCCA-
CTTGGCANNNTGCCAA
 A C G T A C G T A C G T A C T G A C T G A G T C C G A T A T G C T G C A G T A C C G A T A T C G A G T C A G T C C G T A A C G T
A G T C G A C T C A G T A C T G C T A G T G A C G C T A A T G C G C A T A T C G C G A T A C T G G A T C G T A C G T C A C T G A

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:3
Score:0.79
Offset:-1
Orientation:reverse strand
Alignment:-TGGCTCMCTGCCA
TTGGCATGGTGCCA
 A C G T A C G T A C T G A C T G A G T C C G A T A T G C T G C A G T A C C G A T A T C G A G T C A G T C C G T A
G A C T A C G T A C T G A C T G A G T C C G T A G A C T A T C G A T C G C A G T A C T G A G T C A G T C C G T A

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--TGGCTCMCTGCCA
NTTGGCANN------
 A C G T A C G T A C G T A C T G A C T G A G T C C G A T A T G C T G C A G T A C C G A T A T C G A G T C A G T C C G T A
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:5
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-TGGCTCMCTGCCA
TTGGCA--------
 A C G T A C G T A C T G A C T G A G T C C G A T A T G C T G C A G T A C C G A T A T C G A G T C A G T C C G T A
G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:6
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-TGGCTCMCTGCCA
CTGTCTGTCACCT-
 A C G T A C G T A C T G A C T G A G T C C G A T A T G C T G C A G T A C C G A T A T C G A G T C A G T C C G T A
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TGGCTCMCTGCCA
TGTCTGDCACCT-
 A C G T A C T G A C T G A G T C C G A T A T G C T G C A G T A C C G A T A T C G A G T C A G T C C G T A
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:8
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:TGGCTCMCTGCCA
-NGCTN-------
 A C G T A C T G A C T G A G T C C G A T A T G C T G C A G T A C C G A T A T C G A G T C A G T C C G T A
A C G T T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

POL006.1_BREu/Jaspar

Match Rank:9
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:TGGCTCMCTGCCA
-GGCGCGCT----
 A C G T A C T G A C T G A G T C C G A T A T G C T G C A G T A C C G A T A T C G A G T C A G T C C G T A
A C G T C T A G T A C G A G T C A C T G A G T C A T C G A T G C A C G T A C G T A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:10
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---TGGCTCMCTGCCA
NNTTGGCANN------
 A C G T A C G T A C G T A C G T A C T G A C T G A G T C C G A T A T G C T G C A G T A C C G A T A T C G A G T C A G T C C G T A
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T A C G T A C G T A C G T A C G T