Information for 25-ATCTTGATCAAGA (Motif 41)

C G T A A C G T A G T C A C G T A C G T A T C G C G T A A C G T A T G C C G T A C G T A A C T G C G T A
Reverse Opposite:
A C G T A G T C A C G T A C G T A T C G C G T A A C G T A T G C C G T A C G T A A C T G C G T A A C G T
p-value:1e-6
log p-value:-1.438e+01
Information Content per bp:1.940
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.43%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets59.5 +/- 35.4bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0176.1_Sox5_2/Jaspar

Match Rank:1
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-ATCTTGATCAAGA-
TATCATAATTAAGGA
 A C G T C G T A A C G T A G T C A C G T A C G T A T C G C G T A A C G T A T G C C G T A C G T A A C T G C G T A A C G T
C G A T G C T A C G A T A G T C C T G A C A G T T G C A G C T A G C A T G A C T C G T A T G C A T A C G C A T G C G T A

PB0001.1_Arid3a_1/Jaspar

Match Rank:2
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--ATCTTGATCAAGA--
NNNTTTTAATTAANNNN
 A C G T A C G T C G T A A C G T A G T C A C G T A C G T A T C G C G T A A C G T A T G C C G T A C G T A A C T G C G T A A C G T A C G T
C T A G C G T A C G T A C A G T G C A T G A C T A G C T C T G A C G T A C G A T G A C T T C G A C T G A C G T A T G A C T A G C A T G C

PH0016.1_Cux1_1/Jaspar

Match Rank:3
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-ATCTTGATCAAGA---
TNAGNTGATCAACCGGT
 A C G T C G T A A C G T A G T C A C G T A C G T A T C G C G T A A C G T A T G C C G T A C G T A A C T G C G T A A C G T A C G T A C G T
G A C T T A G C G C T A A T C G C A T G C G A T C T A G C G T A A G C T G A T C C G T A C T G A A G T C A G T C C T A G T A C G G A C T

PB0129.1_Glis2_2/Jaspar

Match Rank:4
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-ATCTTGATCAAGA
AATATTAATAAAGA
 A C G T C G T A A C G T A G T C A C G T A C G T A T C G C G T A A C G T A T G C C G T A C G T A A C T G C G T A
G C T A C G T A A C G T C T G A C G A T C A G T C T G A G C T A G C A T G C T A C G T A G T C A C T A G T C G A

Arid3b/MA0601.1/Jaspar

Match Rank:5
Score:0.53
Offset:0
Orientation:forward strand
Alignment:ATCTTGATCAAGA
ATATTAATTAA--
 C G T A A C G T A G T C A C G T A C G T A T C G C G T A A C G T A T G C C G T A C G T A A C T G C G T A
C G T A C G A T G C T A C G A T A C G T C G T A C G T A C G A T G C A T C G T A C G T A A C G T A C G T

PH0153.1_Prop1/Jaspar

Match Rank:6
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--ATCTTGATCAAGA--
GNNTNTTAATTAATNCN
 A C G T A C G T C G T A A C G T A G T C A C G T A C G T A T C G C G T A A C G T A T G C C G T A C G T A A C T G C G T A A C G T A C G T
C T A G G A C T G C A T G C A T G T A C G A C T G A C T C G T A C G T A G A C T A C G T C T G A C T G A A G C T A C G T A G T C A C T G

PB0139.1_Irf5_2/Jaspar

Match Rank:7
Score:0.52
Offset:3
Orientation:forward strand
Alignment:ATCTTGATCAAGA-----
---TTGACCGAGAATTCC
 C G T A A C G T A G T C A C G T A C G T A T C G C G T A A C G T A T G C C G T A C G T A A C T G C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A G C T G C A T C T A G C G T A G A C T G T A C C T A G C T G A A T C G C G T A C T G A G A C T G A C T A G T C T A G C

PH0017.1_Cux1_2/Jaspar

Match Rank:8
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--ATCTTGATCAAGA
TAATGATGATCACTA
 A C G T A C G T C G T A A C G T A G T C A C G T A C G T A T C G C G T A A C G T A T G C C G T A C G T A A C T G C G T A
C G A T T G C A T C G A A G C T C A T G G C T A C G A T C T A G C G T A C A G T G A T C T C G A G T A C C G A T C G T A

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:9
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--ATCTTGATCAAGA
GAATATTCAT-----
 A C G T A C G T C G T A A C G T A G T C A C G T A C G T A T C G C G T A A C G T A T G C C G T A C G T A A C T G C G T A
T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T A C G T A C G T A C G T A C G T A C G T

GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:10
Score:0.51
Offset:-4
Orientation:reverse strand
Alignment:----ATCTTGATCAAGA
NNAGATNVNWATCTN--
 A C G T A C G T A C G T A C G T C G T A A C G T A G T C A C G T A C G T A T C G C G T A A C G T A T G C C G T A C G T A A C T G C G T A
C T A G T G A C C G T A A C T G C G T A A C G T G C T A T C G A A G C T C G A T C G T A A C G T A G T C C G A T T A C G A C G T A C G T