Information for 18-CTGCTTTATTGCCACA (Motif 25)

A G T C A G C T A C T G A T G C A C G T A C G T A C G T G T C A C G A T C G A T A T C G G T A C A G T C C G T A A T G C C G T A
Reverse Opposite:
A C G T A T C G A C G T C T A G A C T G A T G C C G T A G C T A A C G T C G T A C G T A C G T A A T C G G T A C C T G A A C T G
p-value:1e-10
log p-value:-2.520e+01
Information Content per bp:1.815
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.85%
Number of Background Sequences with motif3.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets53.7 +/- 27.3bp
Average Position of motif in Background25.3 +/- 14.6bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:1
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CTGCTTTATTGCCACA
-DGWTTTATGRCN---
 A G T C A G C T A C T G A T G C A C G T A C G T A C G T G T C A C G A T C G A T A T C G G T A C A G T C C G T A A T G C C G T A
A C G T C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C A C G T A C G T A C G T

HOXA10/MA0899.1/Jaspar

Match Rank:2
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:CTGCTTTATTGCCACA
--NTTTTATTACN---
 A G T C A G C T A C T G A T G C A C G T A C G T A C G T G T C A C G A T C G A T A T C G G T A C A G T C C G T A A T G C C G T A
A C G T A C G T C A G T C A G T C A G T G C A T G C A T C G T A A G C T A C G T C T G A A G T C G A T C A C G T A C G T A C G T

CDX1/MA0878.1/Jaspar

Match Rank:3
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:CTGCTTTATTGCCACA
---TTTTATTGC----
 A G T C A G C T A C T G A T G C A C G T A C G T A C G T G T C A C G A T C G A T A T C G G T A C A G T C C G T A A T G C C G T A
A C G T A C G T A C G T C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C A C G T A C G T A C G T A C G T

CDX2/MA0465.1/Jaspar

Match Rank:4
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:CTGCTTTATTGCCACA
---TTTTATGGCTN--
 A G T C A G C T A C T G A T G C A C G T A C G T A C G T G T C A C G A T C G A T A T C G G T A C A G T C C G T A A T G C C G T A
A C G T A C G T A C G T A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T A C G T A C G T

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:5
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CTGCTTTATTGCCACA
-TGATTTATGGCC---
 A G T C A G C T A C T G A T G C A C G T A C G T A C G T G T C A C G A T C G A T A T C G G T A C A G T C C G T A A T G C C G T A
A C G T C G A T C T A G C G T A C G A T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C A C G T A C G T A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:6
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:CTGCTTTATTGCCACA
--NTTTTATGAC----
 A G T C A G C T A C T G A T G C A C G T A C G T A C G T G T C A C G A T C G A T A T C G G T A C A G T C C G T A A T G C C G T A
A C G T A C G T C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C A C G T A C G T A C G T A C G T

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:7
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CTGCTTTATTGCCACA
-TGATTTATGGCC---
 A G T C A G C T A C T G A T G C A C G T A C G T A C G T G T C A C G A T C G A T A T C G G T A C A G T C C G T A A T G C C G T A
A C G T C G A T C T A G G C T A C G A T C A G T A C G T G T C A A G C T C A T G T C A G A G T C A G T C A C G T A C G T A C G T

Hoxc9/MA0485.1/Jaspar

Match Rank:8
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CTGCTTTATTGCCACA
NTGATTTATGGCC---
 A G T C A G C T A C T G A T G C A C G T A C G T A C G T G T C A C G A T C G A T A T C G G T A C A G T C C G T A A T G C C G T A
T C A G C G A T C T A G C G T A A C G T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C A C G T A C G T A C G T

HOXA13/MA0650.1/Jaspar

Match Rank:9
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CTGCTTTATTGCCACA
--TTTTTATTGG----
 A G T C A G C T A C T G A T G C A C G T A C G T A C G T G T C A C G A T C G A T A T C G G T A C A G T C C G T A A T G C C G T A
A C G T A C G T C A G T A C G T A C G T C G A T C G A T C G T A C G A T C A G T T C A G A T C G A C G T A C G T A C G T A C G T

PH0013.1_Cdx2/Jaspar

Match Rank:10
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CTGCTTTATTGCCACA
NAATTTTATTACCNNN
 A G T C A G C T A C T G A T G C A C G T A C G T A C G T G T C A C G A T C G A T A T C G G T A C A G T C C G T A A T G C C G T A
C T G A G T C A C T G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T A G C T G C A T