Information for 11-TGCACRGAYCTSA (Motif 23)

A C G T A C T G A G T C C G T A A G T C C T A G A C T G C G T A G A C T A T G C A C G T A T G C C G T A
Reverse Opposite:
A C G T A T C G C G T A A T C G C T A G A C G T A G T C A G T C A C T G A C G T A C T G A G T C C G T A
p-value:1e-9
log p-value:-2.080e+01
Information Content per bp:1.894
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.76%
Number of Background Sequences with motif3.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets61.0 +/- 35.2bp
Average Position of motif in Background58.8 +/- 7.1bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0026.1_Gm397_1/Jaspar

Match Rank:1
Score:0.59
Offset:-6
Orientation:forward strand
Alignment:------TGCACRGAYCTSA
CAGATGTGCACATACGT--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C C G T A A G T C C T A G A C T G C G T A G A C T A T G C A C G T A T G C C G T A
G T A C G C T A C A T G C G T A C G A T T A C G A G C T C T A G A G T C C T G A A T G C G C T A A G C T G T C A G T A C C A T G G A C T A C G T A C G T

PB0104.1_Zscan4_1/Jaspar

Match Rank:2
Score:0.57
Offset:-6
Orientation:forward strand
Alignment:------TGCACRGAYCTSA
TACATGTGCACATAAAA--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C C G T A A G T C C T A G A C T G C G T A G A C T A T G C A C G T A T G C C G T A
C A G T G T C A T G A C C T G A C G A T T C A G A G C T C T A G A G T C C T G A A G T C G C T A A G C T G C T A G C T A C G T A G T C A A C G T A C G T

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:3
Score:0.54
Offset:1
Orientation:forward strand
Alignment:TGCACRGAYCTSA
-GCACGTACCC--
 A C G T A C T G A G T C C G T A A G T C C T A G A C T G C G T A G A C T A T G C A C G T A T G C C G T A
A C G T C A T G A G T C C T G A T G A C A T C G G A C T G T C A A G T C T A G C G A T C A C G T A C G T

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:4
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:TGCACRGAYCTSA
-GCACGTAY----
 A C G T A C T G A G T C C G T A A G T C C T A G A C T G C G T A G A C T A T G C A C G T A T G C C G T A
A C G T C A T G T A G C C T G A G A T C C T A G G A C T G T C A A G C T A C G T A C G T A C G T A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:TGCACRGAYCTSA
TGCCCAGNHW---
 A C G T A C T G A G T C C G T A A G T C C T A G A C T G C G T A G A C T A T G C A C G T A T G C C G T A
C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A A C G T A C G T A C G T

PB0208.1_Zscan4_2/Jaspar

Match Rank:6
Score:0.51
Offset:-3
Orientation:forward strand
Alignment:---TGCACRGAYCTSA
CGAAGCACACAAAATA
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A A G T C C T A G A C T G C G T A G A C T A T G C A C G T A T G C C G T A
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--TGCACRGAYCTSA
RGGGCACTAACY---
 A C G T A C G T A C G T A C T G A G T C C G T A A G T C C T A G A C T G C G T A G A C T A T G C A C G T A T G C C G T A
T C G A C A T G C A T G T A C G G T A C T C G A A G T C C A G T C T G A C G T A A G T C G A C T A C G T A C G T A C G T

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:8
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:TGCACRGAYCTSA
BGCACGTA-----
 A C G T A C T G A G T C C G T A A G T C C T A G A C T G C G T A G A C T A T G C A C G T A T G C C G T A
A T C G C A T G A G T C C T G A T A G C C T A G A G C T T G C A A C G T A C G T A C G T A C G T A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:9
Score:0.50
Offset:-1
Orientation:forward strand
Alignment:-TGCACRGAYCTSA
TBGCACGCAA----
 A C G T A C G T A C T G A G T C C G T A A G T C C T A G A C T G C G T A G A C T A T G C A C G T A T G C C G T A
G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A A C G T A C G T A C G T A C G T

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:10
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:TGCACRGAYCTSA
-GCAGTGATTT--
 A C G T A C T G A G T C C G T A A G T C C T A G A C T G C G T A G A C T A T G C A C G T A T G C C G T A
A C G T C T A G A G T C G C T A A T C G C G A T A C T G T C G A A C G T A C G T A C G T A C G T A C G T