Information for 1-AGGTCAGGGTGAC (Motif 1)

T C G A C T A G A C T G A C G T A G T C C G T A A T C G A C T G T A C G C G A T A T C G C T G A G T A C
Reverse Opposite:
A C T G A G C T A T G C C G T A A T G C T G A C T A G C A C G T A C T G C G T A G T A C A G T C A C G T
p-value:1e-20
log p-value:-4.764e+01
Information Content per bp:1.745
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif2.57%
Number of Background Sequences with motif33.1
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets45.4 +/- 25.7bp
Average Position of motif in Background53.8 +/- 25.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.91
Offset:-1
Orientation:forward strand
Alignment:-AGGTCAGGGTGAC-
NAGGTCACNNTGACC
 A C G T T C G A C T A G A C T G A C G T A G T C C G T A A T C G A C T G T A C G C G A T A T C G C T G A G T A C A C G T
T G C A C T G A C A T G C T A G C A G T A G T C C G T A A T G C A T G C T A C G G C A T T C A G G T C A G A T C G T A C

ESR1/MA0112.3/Jaspar

Match Rank:2
Score:0.88
Offset:-1
Orientation:reverse strand
Alignment:-AGGTCAGGGTGAC---
CAGGTCACCGTGACCTT
 A C G T T C G A C T A G A C T G A C G T A G T C C G T A A T C G A C T G T A C G C G A T A T C G C T G A G T A C A C G T A C G T A C G T
T G A C T C G A A C T G A T C G A C G T A G T C T C G A A G T C A T G C A C T G A G C T C T A G G T C A A G T C G T A C A G C T G A C T

ESR2/MA0258.2/Jaspar

Match Rank:3
Score:0.84
Offset:0
Orientation:forward strand
Alignment:AGGTCAGGGTGAC--
AGGTCACCCTGACCT
 T C G A C T A G A C T G A C G T A G T C C G T A A T C G A C T G T A C G C G A T A T C G C T G A G T A C A C G T A C G T
C T G A C A T G C T A G A C G T A T G C C G T A A T G C T G A C T A G C G C A T T C A G G T C A G A T C G A T C G A C T

PPARG/MA0066.1/Jaspar

Match Rank:4
Score:0.79
Offset:-2
Orientation:forward strand
Alignment:--AGGTCAGGGTGAC-----
GTAGGTCACGGTGACCTACT
 A C G T A C G T T C G A C T A G A C T G A C G T A G T C C G T A A T C G A C T G T A C G C G A T A T C G C T G A G T A C A C G T A C G T A C G T A C G T A C G T
A T C G C G A T C T G A A T C G C A T G A C G T T A G C G C T A G T A C A T C G C A T G C A G T T A C G G T C A G T A C A G T C G A C T G T C A A T G C C G A T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:5
Score:0.73
Offset:0
Orientation:forward strand
Alignment:AGGTCAGGGTGAC
AGGTCAAGGTCA-
 T C G A C T A G A C T G A C G T A G T C C G T A A T C G A C T G T A C G C G A T A T C G C T G A G T A C
T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A A C G T

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:6
Score:0.73
Offset:0
Orientation:forward strand
Alignment:AGGTCAGGGTGAC
AGGTCAAGGTCA-
 T C G A C T A G A C T G A C G T A G T C C G T A A T C G A C T G T A C G C G A T A T C G C T G A G T A C
C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:7
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--AGGTCAGGGTGAC
TRAGGTCA-------
 A C G T A C G T T C G A C T A G A C T G A C G T A G T C C G T A A T C G A C T G T A C G C G A T A T C G C T G A G T A C
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:8
Score:0.70
Offset:0
Orientation:forward strand
Alignment:AGGTCAGGGTGAC
AGGTCA-------
 T C G A C T A G A C T G A C G T A G T C C G T A A T C G A C T G T A C G C G A T A T C G C T G A G T A C
C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:9
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----AGGTCAGGGTGAC
ATCAAGGTCA-------
 A C G T A C G T A C G T A C G T T C G A C T A G A C T G A C G T A G T C C G T A A T C G A C T G T A C G C G A T A T C G C T G A G T A C
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:10
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-AGGTCAGGGTGAC
AAGGTCAC------
 A C G T T C G A C T A G A C T G A C G T A G T C C G T A A T C G A C T G T A C G C G A T A T C G C T G A G T A C
C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T A C G T A C G T A C G T A C G T