Information for 1-WCGCACGCMA (Motif 1)

C G A T A T G C C A T G A T G C G C T A G A T C A C T G T G A C T G A C T G C A
Reverse Opposite:
A C G T A C T G A C T G T G A C C T A G C G A T A T C G G T A C T A C G G C T A
p-value:1e-20
log p-value:-4.620e+01
Information Content per bp:1.637
Number of Target Sequences with motif41.0
Percentage of Target Sequences with motif8.99%
Number of Background Sequences with motif669.6
Percentage of Background Sequences with motif1.38%
Average Position of motif in Targets53.8 +/- 24.6bp
Average Position of motif in Background48.8 +/- 31.7bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:1
Score:0.93
Offset:0
Orientation:forward strand
Alignment:WCGCACGCMA
TBGCACGCAA
 C G A T A T G C C A T G A T G C G C T A G A T C A C T G T G A C T G A C T G C A
G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:2
Score:0.85
Offset:3
Orientation:reverse strand
Alignment:WCGCACGCMA
---CACGCA-
 C G A T A T G C C A T G A T G C G C T A G A T C A C T G T G A C T G A C T G C A
A C G T A C G T A C G T A G T C C G T A G T A C C T A G G T A C C T G A A C G T

Hes1/MA1099.1/Jaspar

Match Rank:3
Score:0.77
Offset:1
Orientation:forward strand
Alignment:WCGCACGCMA-
-GGCACGCGTC
 C G A T A T G C C A T G A T G C G C T A G A T C A C T G T G A C T G A C T G C A A C G T
A C G T T A C G T A C G G A T C C T G A A G T C T C A G G A T C A C T G G A C T G T A C

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:4
Score:0.76
Offset:2
Orientation:reverse strand
Alignment:WCGCACGCMA
--GCACGTNC
 C G A T A T G C C A T G A T G C G C T A G A T C A C T G T G A C T G A C T G C A
A C G T A C G T A T C G A G T C C G T A A G T C C T A G A G C T T G A C A T G C

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:5
Score:0.76
Offset:2
Orientation:reverse strand
Alignment:WCGCACGCMA
--GCACGTAY
 C G A T A T G C C A T G A T G C G C T A G A T C A C T G T G A C T G A C T G C A
A C G T A C G T C A T G T A G C C T G A G A T C C T A G G A C T G T C A A G C T

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:6
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:WCGCACGCMA
-BGCACGTA-
 C G A T A T G C C A T G A T G C G C T A G A T C A C T G T G A C T G A C T G C A
A C G T A T C G C A T G A G T C C T G A T A G C C T A G A G C T T G C A A C G T

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:7
Score:0.69
Offset:2
Orientation:forward strand
Alignment:WCGCACGCMA--
--GCACGTACCC
 C G A T A T G C C A T G A T G C G C T A G A T C A C T G T G A C T G A C T G C A A C G T A C G T
A C G T A C G T C A T G A G T C C T G A T G A C A T C G G A C T G T C A A G T C T A G C G A T C

PB0147.1_Max_2/Jaspar

Match Rank:8
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-WCGCACGCMA---
GTGCCACGCGACTG
 A C G T C G A T A T G C C A T G A T G C G C T A G A T C A C T G T G A C T G A C T G C A A C G T A C G T A C G T
A C T G A G C T A C T G G A T C A G T C C G T A A G T C T C A G G A T C A C T G T C G A T G A C C A G T C A T G

PB0208.1_Zscan4_2/Jaspar

Match Rank:9
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--WCGCACGCMA----
CGAAGCACACAAAATA
 A C G T A C G T C G A T A T G C C A T G A T G C G C T A G A T C A C T G T G A C T G A C T G C A A C G T A C G T A C G T A C G T
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

PB0008.1_E2F2_1/Jaspar

Match Rank:10
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-WCGCACGCMA----
NTCGCGCGCCTTNNN
 A C G T C G A T A T G C C A T G A T G C G C T A G A T C A C T G T G A C T G A C T G C A A C G T A C G T A C G T A C G T
C G T A C G A T A T G C C T A G T A G C A T C G A T G C A C T G A T G C A T G C G A C T C G A T G C A T C G T A A G C T