Information for 4-AGAAWYAATYWGTTKT (Motif 9)

C G T A C T A G C G T A G T C A G C T A A G C T T C G A C G T A C A G T G A T C G C A T C T A G C G A T C G A T C A T G C G A T
Reverse Opposite:
G C T A G T A C C G T A G C T A G A T C C G T A C T A G G T C A C G A T A G C T T C G A C G A T A C G T G C A T G A T C A C G T
p-value:1e-8
log p-value:-1.996e+01
Information Content per bp:1.582
Number of Target Sequences with motif39.0
Percentage of Target Sequences with motif6.98%
Number of Background Sequences with motif1154.5
Percentage of Background Sequences with motif2.32%
Average Position of motif in Targets51.5 +/- 24.0bp
Average Position of motif in Background49.6 +/- 24.9bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0018.1_Dbx1/Jaspar

Match Rank:1
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--AGAAWYAATYWGTTKT
TNATTATTAATTAATTA-
 A C G T A C G T C G T A C T A G C G T A G T C A G C T A A G C T T C G A C G T A C A G T G A T C G C A T C T A G C G A T C G A T C A T G C G A T
G A C T C G T A G C T A A G C T G A C T C G T A C G A T G C A T C G T A C G T A G C A T C G A T C G T A C G T A G A C T C G A T C T G A A C G T

PH0106.1_Msx1/Jaspar

Match Rank:2
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:AGAAWYAATYWGTTKT-
-NNATTAATTAGTNGNN
 C G T A C T A G C G T A G T C A G C T A A G C T T C G A C G T A C A G T G A T C G C A T C T A G C G A T C G A T C A T G C G A T A C G T
A C G T C A T G C G T A T G C A G A C T G A C T C G T A C G T A A C G T A C G T C T G A C T A G G A C T C G A T C A T G A G T C T G C A

PH0108.1_Msx3/Jaspar

Match Rank:3
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:AGAAWYAATYWGTTKT-
-NNNTTAATTGGTTTTN
 C G T A C T A G C G T A G T C A G C T A A G C T T C G A C G T A C A G T G A T C G C A T C T A G C G A T C G A T C A T G C G A T A C G T
A C G T C G T A C G T A G T C A G A C T G A C T C G T A C G T A A C G T A G C T C T A G T A C G A C G T G A C T C A G T A G C T A C T G

PH0088.1_Isl2/Jaspar

Match Rank:4
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:AGAAWYAATYWGTTKT-
-AAATTAATTGATTTNG
 C G T A C T A G C G T A G T C A G C T A A G C T T C G A C G T A C A G T G A T C G C A T C T A G C G A T C G A T C A T G C G A T A C G T
A C G T C T G A G C T A G T C A G A C T G C A T C G T A C G T A A C G T A C G T C T A G T C G A C A G T C A G T C A G T C G A T C A T G

PH0147.1_Pou3f2/Jaspar

Match Rank:5
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-AGAAWYAATYWGTTKT
GATAATTAATTAGTTTG
 A C G T C G T A C T A G C G T A G T C A G C T A A G C T T C G A C G T A C A G T G A T C G C A T C T A G C G A T C G A T C A T G C G A T
T A C G C G A T C G A T C G T A G C T A G A C T A G C T G C T A C G T A C G A T A C G T G C T A C T A G A C G T C A G T G A C T C T A G

PH0028.1_En1/Jaspar

Match Rank:6
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:AGAAWYAATYWGTTKT-
-GNATTAATTAGTTNNC
 C G T A C T A G C G T A G T C A G C T A A G C T T C G A C G T A C A G T G A T C G C A T C T A G C G A T C G A T C A T G C G A T A C G T
A C G T A C T G G A T C T G C A G A C T G A C T C G T A C G T A A G C T A G C T C T G A C T A G A C G T A C G T A G T C A T C G A G T C

PB0066.1_Sox17_1/Jaspar

Match Rank:7
Score:0.57
Offset:0
Orientation:forward strand
Alignment:AGAAWYAATYWGTTKT
ATAAACAATTAAACA-
 C G T A C T A G C G T A G T C A G C T A A G C T T C G A C G T A C A G T G A T C G C A T C T A G C G A T C G A T C A T G C G A T
T G C A C G A T C T G A C G T A C G T A A G T C C G T A C G T A C G A T C G A T T C G A G C T A G C A T G A T C C G T A A C G T

PH0120.1_Nkx6-3/Jaspar

Match Rank:8
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-AGAAWYAATYWGTTKT
GAAAATTAATTACTTTG
 A C G T C G T A C T A G C G T A G T C A G C T A A G C T T C G A C G T A C A G T G A T C G C A T C T A G C G A T C G A T C A T G C G A T
C T A G T G C A G C A T C G T A G C T A C G A T G A C T C G T A C G T A C G A T A C G T C T G A T G A C A G C T A C G T A G C T A C T G

PH0149.1_Pou3f4/Jaspar

Match Rank:9
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--AGAAWYAATYWGTTKT
AATTAATTAATTAATTC-
 A C G T A C G T C G T A C T A G C G T A G T C A G C T A A G C T T C G A C G T A C A G T G A T C G C A T C T A G C G A T C G A T C A T G C G A T
C T G A T G C A G C A T C A G T G T C A G C T A C G A T C G A T G C T A C G T A C A G T C A G T G C T A C T G A C A G T C G A T A G T C A C G T

PH0146.1_Pou3f1/Jaspar

Match Rank:10
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--AGAAWYAATYWGTTKT
AATTAATTAATTAATTC-
 A C G T A C G T C G T A C T A G C G T A G T C A G C T A A G C T T C G A C G T A C A G T G A T C G C A T C T A G C G A T C G A T C A T G C G A T
C T G A T G C A A G C T C A G T G T C A G C T A C G A T C G A T G C T A C G T A C A G T C A G T G T C A T C G A A C G T C G A T G T A C A C G T