Information for 1-TGCWAAMTGTGAC (Motif 3)

C G A T C T A G T G A C C G T A T G C A G C T A G T A C A C G T A C T G C G A T T C A G G C T A A T G C
Reverse Opposite:
A T C G C G A T A G T C C G T A T G A C C G T A C A T G C G A T A C G T C G A T A C T G G A T C G C T A
p-value:1e-10
log p-value:-2.368e+01
Information Content per bp:1.579
Number of Target Sequences with motif27.0
Percentage of Target Sequences with motif4.83%
Number of Background Sequences with motif503.1
Percentage of Background Sequences with motif1.01%
Average Position of motif in Targets56.0 +/- 24.3bp
Average Position of motif in Background50.7 +/- 26.8bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

DMRT3/MA0610.1/Jaspar

Match Rank:1
Score:0.62
Offset:5
Orientation:forward strand
Alignment:TGCWAAMTGTGAC---
-----AATGTATCAAT
 C G A T C T A G T G A C C G T A T G C A G C T A G T A C A C G T A C T G C G A T T C A G G C T A A T G C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G T C A C G T A C G A T A C T G A C G T C G T A C G A T A G T C G T C A C G T A A C G T

PB0177.1_Sox7_2/Jaspar

Match Rank:2
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-TGCWAAMTGTGAC--------
GTGCTAATTGTGTGTGTACGCT
 A C G T C G A T C T A G T G A C C G T A T G C A G C T A G T A C A C G T A C T G C G A T T C A G G C T A A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C T G C G A T T A C G A T G C C G A T G T C A C G T A G C A T G C A T T C A G G C A T T A C G G A C T T A C G G C A T T C A G A C G T C T G A G A T C A C T G T A G C A G C T

PH0086.1_Irx5/Jaspar

Match Rank:3
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--TGCWAAMTGTGAC--
ANTNNTACATGTANNTN
 A C G T A C G T C G A T C T A G T G A C C G T A T G C A G C T A G T A C A C G T A C T G C G A T T C A G G C T A A T G C A C G T A C G T
G C T A G T C A G C A T G C A T C A G T C G A T G C T A A G T C C G T A G C A T T C A G C G A T G C T A C G A T G C T A G C A T G C A T

PH0082.1_Irx2/Jaspar

Match Rank:4
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-TGCWAAMTGTGAC---
TAAATACATGTAAAATT
 A C G T C G A T C T A G T G A C C G T A T G C A G C T A G T A C A C G T A C T G C G A T T C A G G C T A A T G C A C G T A C G T A C G T
C G A T C G T A C G T A C T G A C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A C G T A C T G A C G T A A C G T G C A T

PH0084.1_Irx3_2/Jaspar

Match Rank:5
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--TGCWAAMTGTGAC--
NNTATTACATGTANNNT
 A C G T A C G T C G A T C T A G T G A C C G T A T G C A G C T A G T A C A C G T A C T G C G A T T C A G G C T A A T G C A C G T A C G T
G C A T C T G A G C A T G C T A A C G T C G A T C G T A G A T C C G T A G C A T C T A G C G A T G C T A C G A T G C T A G C A T G C A T

Myb/MA0100.2/Jaspar

Match Rank:6
Score:0.57
Offset:2
Orientation:forward strand
Alignment:TGCWAAMTGTGAC
--CCAACTGCCA-
 C G A T C T A G T G A C C G T A T G C A G C T A G T A C A C G T A C T G C G A T T C A G G C T A A T G C
A C G T A C G T A G T C G A T C C G T A C T G A A G T C C G A T A C T G G A T C G T A C G C T A A C G T

PH0083.1_Irx3_1/Jaspar

Match Rank:7
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--TGCWAAMTGTGAC--
ANTATTACATGTANNNN
 A C G T A C G T C G A T C T A G T G A C C G T A T G C A G C T A G T A C A C G T A C T G C G A T T C A G G C T A A T G C A C G T A C G T
G C T A C T A G G C A T G C T A A C G T C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A A G C T G C A T G A C T G C A T

PH0085.1_Irx4/Jaspar

Match Rank:8
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--TGCWAAMTGTGAC--
NNTTTTACATGTANNNT
 A C G T A C G T C G A T C T A G T G A C C G T A T G C A G C T A G T A C A C G T A C T G C G A T T C A G G C T A A T G C A C G T A C G T
G C A T T A C G G C A T G C A T C A G T C G A T C G T A A G T C C G T A G C A T C T A G G C A T G C T A G A C T C G T A G C A T G C A T

PKNOX2/MA0783.1/Jaspar

Match Rank:9
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:TGCWAAMTGTGAC
TGACACCTGTCA-
 C G A T C T A G T G A C C G T A T G C A G C T A G T A C A C G T A C T G C G A T T C A G G C T A A T G C
G A C T A C T G C T G A A G T C C T G A A T G C G T A C G C A T C T A G G A C T A T G C G C T A A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:10
Score:0.55
Offset:4
Orientation:forward strand
Alignment:TGCWAAMTGTGAC-
----VGCTGWCAVB
 C G A T C T A G T G A C C G T A T G C A G C T A G T A C A C G T A C T G C G A T T C A G G C T A A T G C A C G T
A C G T A C G T A C G T A C G T T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C