Information for 5-GCMAAAACCCAGWGGT (Motif 7)

A C T G A T G C G T A C G T C A C G T A C G T A G T C A A G T C A T G C G T A C C G T A A T C G C G A T C A T G A T C G A C G T
Reverse Opposite:
C G T A A T G C G T A C C G T A A T G C C G A T C A T G A T C G A C T G A C G T A C G T A C G T A C G T A C T G A T C G G T A C
p-value:1e-14
log p-value:-3.276e+01
Information Content per bp:1.759
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.05%
Number of Background Sequences with motif4.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets28.4 +/- 11.8bp
Average Position of motif in Background55.1 +/- 29.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-GCMAAAACCCAGWGGT
TGCCAAAATAAACANN-
 A C G T A C T G A T G C G T A C G T C A C G T A C G T A G T C A A G T C A T G C G T A C C G T A A T C G C G A T C A T G A T C G A C G T
C G A T A C T G T A G C G T A C C G T A C T G A C T G A C T G A G A C T G T C A G T C A C T G A A G T C C G T A C T G A G C T A A C G T

MF0003.1_REL_class/Jaspar

Match Rank:2
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:GCMAAAACCCAGWGGT
GGAAATCCCC------
 A C T G A T G C G T A C G T C A C G T A C G T A G T C A A G T C A T G C G T A C C G T A A T C G C G A T C A T G A T C G A C G T
C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C A C G T A C G T A C G T A C G T A C G T A C G T

ELF1/MA0473.2/Jaspar

Match Rank:3
Score:0.51
Offset:5
Orientation:forward strand
Alignment:GCMAAAACCCAGWGGT-
-----AACCCGGAAGTG
 A C T G A T G C G T A C G T C A C G T A C G T A G T C A A G T C A T G C G T A C C G T A A T C G C G A T C A T G A T C G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A G C T A G T A C T A G C G T A C A C T G A C T G C T G A G C T A C T A G G A C T T C A G

ELF4/MA0641.1/Jaspar

Match Rank:4
Score:0.51
Offset:5
Orientation:forward strand
Alignment:GCMAAAACCCAGWGGT-
-----AACCCGGAAGTG
 A C T G A T G C G T A C G T C A C G T A C G T A G T C A A G T C A T G C G T A C C G T A A T C G C G A T C A T G A T C G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A G C T A G T A C T A G C T G A C C T A G A C T G C G T A G T C A T C A G A G C T C T A G

Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.50
Offset:0
Orientation:forward strand
Alignment:GCMAAAACCCAGWGGT
GCCACACCCA------
 A C T G A T G C G T A C G T C A C G T A C G T A G T C A A G T C A T G C G T A C C G T A A T C G C G A T C A T G A T C G A C G T
C T A G G T A C A G T C T G C A A G T C C T G A A G T C A G T C A G T C G C T A A C G T A C G T A C G T A C G T A C G T A C G T

ELF3/MA0640.1/Jaspar

Match Rank:6
Score:0.50
Offset:5
Orientation:forward strand
Alignment:GCMAAAACCCAGWGGT--
-----AACCCGGAAGTAA
 A C T G A T G C G T A C G T C A C G T A C G T A G T C A A G T C A T G C G T A C C G T A A T C G C G A T C A T G A T C G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C T A G C T A T A G C T A G C T G A C C T A G A C T G T C G A G C T A C T A G G A C T C T G A C T G A

PB0121.1_Foxj3_2/Jaspar

Match Rank:7
Score:0.50
Offset:-3
Orientation:forward strand
Alignment:---GCMAAAACCCAGWGGT
AACACCAAAACAAAGGA--
 A C G T A C G T A C G T A C T G A T G C G T A C G T C A C G T A C G T A G T C A A G T C A T G C G T A C C G T A A T C G C G A T C A T G A T C G A C G T
G T C A C G T A A G T C C T G A G A T C G A T C T G C A G C T A G T C A C G T A A G T C C G T A C G T A G C T A C A T G T A C G C G T A A C G T A C G T

Gfi1/MA0038.1/Jaspar

Match Rank:8
Score:0.50
Offset:2
Orientation:forward strand
Alignment:GCMAAAACCCAGWGGT
--CAAATCACTG----
 A C T G A T G C G T A C G T C A C G T A C G T A G T C A A G T C A T G C G T A C C G T A A T C G C G A T C A T G A T C G A C G T
A C G T A C G T A G T C T G C A C G T A C G T A C A G T G T A C G C T A T A G C G C A T T A C G A C G T A C G T A C G T A C G T

PB0145.1_Mafb_2/Jaspar

Match Rank:9
Score:0.50
Offset:-5
Orientation:forward strand
Alignment:-----GCMAAAACCCAGWGGT
CAATTGCAAAAATAT------
 A C G T A C G T A C G T A C G T A C G T A C T G A T G C G T A C G T C A C G T A C G T A G T C A A G T C A T G C G T A C C G T A A T C G C G A T C A T G A T C G A C G T
G T A C T C G A C G T A A C G T A C G T A C T G G A T C C T G A C G T A G C T A C G T A C G T A G C A T C T G A G C A T A C G T A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:10
Score:0.50
Offset:-3
Orientation:forward strand
Alignment:---GCMAAAACCCAGWGGT
CGTGCCAAG----------
 A C G T A C G T A C G T A C T G A T G C G T A C G T C A C G T A C G T A G T C A A G T C A T G C G T A C C G T A A T C G C G A T C A T G A T C G A C G T
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T