Information for 14-GSCTGCCTGTATCTGA (Motif 21)

A C T G A T C G G A T C A C G T A C T G G A T C A G T C C G A T A C T G C A G T C G T A G A C T G A T C C A G T T C A G C G T A
Reverse Opposite:
C G A T A G T C G C T A C A T G C T G A G C A T G C T A A G T C C G T A A C T G C A T G A G T C C G T A C A T G A T G C G T A C
p-value:1e-9
log p-value:-2.079e+01
Information Content per bp:1.731
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.79%
Number of Background Sequences with motif6.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets47.3 +/- 20.8bp
Average Position of motif in Background67.6 +/- 8.3bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:1
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----GSCTGCCTGTATCTGA
GTCATGCHTGRCTGS------
 A C G T A C G T A C G T A C G T A C G T A C T G A T C G G A T C A C G T A C T G G A T C A G T C C G A T A C T G C A G T C G T A G A C T G A T C C A G T T C A G C G T A
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C A C G T A C G T A C G T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:2
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GSCTGCCTGTATCTGA
NNTNNTGTCTGGNNTNG-
 A C G T A C G T A C T G A T C G G A T C A C G T A C T G G A T C A G T C C G A T A C T G C A G T C G T A G A C T G A T C C A G T T C A G C G T A
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GSCTGCCTGTATCTGA
VBSYGTCTGG------
 A C T G A T C G G A T C A C G T A C T G G A T C A G T C C G A T A C T G C A G T C G T A G A C T G A T C C A G T T C A G C G T A
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.57
Offset:2
Orientation:forward strand
Alignment:GSCTGCCTGTATCTGA
--CTGTCTGG------
 A C T G A T C G G A T C A C G T A C T G G A T C A G T C C G A T A C T G C A G T C G T A G A C T G A T C C A G T T C A G C G T A
A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.55
Offset:2
Orientation:forward strand
Alignment:GSCTGCCTGTATCTGA
--TWGTCTGV------
 A C T G A T C G G A T C A C G T A C T G G A T C A G T C C G A T A C T G C A G T C G T A G A C T G A T C C A G T T C A G C G T A
A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:6
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:GSCTGCCTGTATCTGA
-ACTTCCTGTT-----
 A C T G A T C G G A T C A C G T A C T G G A T C A G T C C G A T A C T G C A G T C G T A G A C T G A T C C A G T T C A G C G T A
A C G T T C G A A G T C C G A T C G A T A G T C A G T C A C G T T A C G G A C T A C G T A C G T A C G T A C G T A C G T A C G T

PB0151.1_Myf6_2/Jaspar

Match Rank:7
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GSCTGCCTGTATCTGA
GGNGCGNCTGTTNNN--
 A C G T A C T G A T C G G A T C A C G T A C T G G A T C A G T C C G A T A C T G C A G T C G T A G A C T G A T C C A G T T C A G C G T A
C T A G A C T G G A C T A T C G A T G C A T C G A C T G G A T C A G C T C T A G A C G T A G C T A C T G A T G C A G C T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:8
Score:0.55
Offset:5
Orientation:forward strand
Alignment:GSCTGCCTGTATCTGA
-----GCTGTG-----
 A C T G A T C G G A T C A C G T A C T G G A T C A G T C C G A T A C T G C A G T C G T A G A C T G A T C C A G T T C A G C G T A
A C G T A C G T A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T A C G T A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:9
Score:0.54
Offset:4
Orientation:forward strand
Alignment:GSCTGCCTGTATCTGA
----GSCTGTCACTCA
 A C T G A T C G G A T C A C G T A C T G G A T C A G T C C G A T A C T G C A G T C G T A G A C T G A T C C A G T T C A G C G T A
A C G T A C G T A C G T A C G T C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A

ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer

Match Rank:10
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:GSCTGCCTGTATCTGA
CACTTCCTGT------
 A C T G A T C G G A T C A C G T A C T G G A T C A G T C C G A T A C T G C A G T C G T A G A C T G A T C C A G T T C A G C G T A
A G T C T C G A A G T C C G A T A C G T A G T C A G T C A C G T A T C G A G C T A C G T A C G T A C G T A C G T A C G T A C G T