Information for 2-CCACTAGGGGGCG (Motif 2)

T A G C A G T C G T C A A T G C A G C T C G T A C T A G C T A G C A T G A C T G A T C G G T A C T C A G
Reverse Opposite:
A G T C C A T G A T G C A G T C G T A C A G T C A G T C A C G T C T G A T A C G A C G T A C T G A C T G
p-value:1e-43
log p-value:-9.952e+01
Information Content per bp:1.786
Number of Target Sequences with motif40.0
Percentage of Target Sequences with motif5.50%
Number of Background Sequences with motif89.6
Percentage of Background Sequences with motif0.19%
Average Position of motif in Targets50.0 +/- 17.6bp
Average Position of motif in Background50.5 +/- 29.4bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.89
Offset:-1
Orientation:reverse strand
Alignment:-CCACTAGGGGGCG------
GCCASCAGGGGGCGCYVNNG
 A C G T T A G C A G T C G T C A A T G C A G C T C G T A C T A G C T A G C A T G A C T G A T C G G T A C T C A G A C G T A C G T A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.89
Offset:-3
Orientation:forward strand
Alignment:---CCACTAGGGGGCG---
TGGCCACCAGGGGGCGCTA
 A C G T A C G T A C G T T A G C A G T C G T C A A T G C A G C T C G T A C T A G C T A G C A T G A C T G A T C G G T A C T C A G A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.86
Offset:-3
Orientation:reverse strand
Alignment:---CCACTAGGGGGCG----
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C G T T A G C A G T C G T C A A T G C A G C T C G T A C T A G C T A G C A T G A C T G A T C G G T A C T C A G A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

PB0076.1_Sp4_1/Jaspar

Match Rank:4
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:CCACTAGGGGGCG-----
-NNNAAGGGGGCGGGNNN
 T A G C A G T C G T C A A T G C A G C T C G T A C T A G C T A G C A T G A C T G A T C G G T A C T C A G A C G T A C G T A C G T A C G T A C G T
A C G T T A C G T C G A A T C G C T G A C T G A C T A G C A T G C T A G A T C G A C T G G A T C A C T G A C T G C A T G C T G A G A T C T G A C

MZF1(var.2)/MA0057.1/Jaspar

Match Rank:5
Score:0.62
Offset:3
Orientation:forward strand
Alignment:CCACTAGGGGGCG
---GGAGGGGGAA
 T A G C A G T C G T C A A T G C A G C T C G T A C T A G C T A G C A T G A C T G A T C G G T A C T C A G
A C G T A C G T A C G T A C T G C A G T G T C A A C T G A C T G A T C G A C T G C A T G C T G A C T G A

PB0128.1_Gcm1_2/Jaspar

Match Rank:6
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CCACTAGGGGGCG--
TGCGCATAGGGGAGGAG
 A C G T A C G T T A G C A G T C G T C A A T G C A G C T C G T A C T A G C T A G C A T G A C T G A T C G G T A C T C A G A C G T A C G T
C G A T C A T G A T G C T A C G G T A C T C G A A G C T T C G A C A T G A C T G A C T G A C T G T C G A A T C G T C A G G T C A A C T G

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CCACTAGGGGGCG
CACAGCAGGGGG--
 A C G T T A G C A G T C G T C A A T G C A G C T C G T A C T A G C T A G C A T G A C T G A T C G G T A C T C A G
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T

PB0101.1_Zic1_1/Jaspar

Match Rank:8
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CCACTAGGGGGCG
CCCCCCCGGGGGNN
 A C G T T A G C A G T C G T C A A T G C A G C T C G T A C T A G C T A G C A T G A C T G A T C G G T A C T C A G
T A G C T G A C G A T C G T A C G T A C A T G C T A G C A T C G T A C G A C T G A C T G C A T G C A G T T A C G

KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.58
Offset:5
Orientation:forward strand
Alignment:CCACTAGGGGGCG----
-----RGKGGGCGKGGC
 T A G C A G T C G T C A A T G C A G C T C G T A C T A G C T A G C A T G A C T G A T C G G T A C T C A G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T A G T C A G C A G T T C A G A C T G A C T G G A T C C T A G A C T G C T A G T C A G A T G C

PB0103.1_Zic3_1/Jaspar

Match Rank:10
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--CCACTAGGGGGCG
NCCCCCCCGGGGGGN
 A C G T A C G T T A G C A G T C G T C A A T G C A G C T C G T A C T A G C T A G C A T G A C T G A T C G G T A C T C A G
T C G A T A G C G T A C G T A C G T A C G T A C A T G C T G A C A T C G T A C G A C T G C A T G C A T G C A T G T A C G