Information for 10-GCACGGTGCCATGAGC (Motif 17)

A C T G A G T C C T G A G T A C A T C G C T A G C G A T A C T G A G T C A G T C C G T A C G A T A C T G T G C A A C T G A G T C
Reverse Opposite:
A C T G A G T C A C G T T G A C C G T A A C G T A C T G A C T G A G T C G C T A A G T C A T G C A C T G A G C T A C T G A G T C
p-value:1e-11
log p-value:-2.561e+01
Information Content per bp:1.889
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.69%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets50.4 +/- 12.5bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:1
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---GCACGGTGCCATGAGC
TTGGCATGGTGCCA-----
 A C G T A C G T A C G T A C T G A G T C C T G A G T A C A T C G C T A G C G A T A C T G A G T C A G T C C G T A C G A T A C T G T G C A A C T G A G T C
G A C T A C G T A C T G A C T G A G T C C G T A G A C T A T C G A T C G C A G T A C T G A G T C A G T C C G T A A C G T A C G T A C G T A C G T A C G T

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---GCACGGTGCCATGAGC
TTGGCANNNTGCCAAG---
 A C G T A C G T A C G T A C T G A G T C C T G A G T A C A T C G C T A G C G A T A C T G A G T C A G T C C G T A C G A T A C T G T G C A A C T G A G T C
G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G A C G T A C G T A C G T

PB0113.1_E2F3_2/Jaspar

Match Rank:3
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GCACGGTGCCATGAGC
AGCTCGGCGCCAAAAGC
 A C G T A C T G A G T C C T G A G T A C A T C G C T A G C G A T A C T G A G T C A G T C C G T A C G A T A C T G T G C A A C T G A G T C
G T A C A T C G G A C T C G A T G A T C C T A G A T C G G T A C C A T G T A G C G A T C C G T A G T C A C T G A T G C A A T C G A T G C

PB0112.1_E2F2_2/Jaspar

Match Rank:4
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GCACGGTGCCATGAGC
CCTTCGGCGCCAAAAGG
 A C G T A C T G A G T C C T G A G T A C A T C G C T A G C G A T A C T G A G T C A G T C C G T A C G A T A C T G T G C A A C T G A G T C
G A T C T A C G A G C T C G A T G A T C C T A G A T C G T G A C C A T G T A G C G A T C C T G A G T C A C T G A T C G A A C T G A T C G

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:5
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---GCACGGTGCCATGAGC
CTGGCAGNCTGCCA-----
 A C G T A C G T A C G T A C T G A G T C C T G A G T A C A T C G C T A G C G A T A C T G A G T C A G T C C G T A C G A T A C T G T G C A A C T G A G T C
A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:6
Score:0.55
Offset:4
Orientation:forward strand
Alignment:GCACGGTGCCATGAGC
----CGTGCCAAG---
 A C T G A G T C C T G A G T A C A T C G C T A G C G A T A C T G A G T C A G T C C G T A C G A T A C T G T G C A A C T G A G T C
A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:7
Score:0.55
Offset:4
Orientation:forward strand
Alignment:GCACGGTGCCATGAGC
----GGTGCCAAGT--
 A C T G A G T C C T G A G T A C A T C G C T A G C G A T A C T G A G T C A G T C C G T A C G A T A C T G T G C A A C T G A G T C
A C G T A C G T A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T

MTF1/MA0863.1/Jaspar

Match Rank:8
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:GCACGGTGCCATGAGC---
-----GTGCCGTGTGCAAA
 A C T G A G T C C T G A G T A C A T C G C T A G C G A T A C T G A G T C A G T C C G T A C G A T A C T G T G C A A C T G A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T A G A C G T C T A G G T A C G A T C A C T G A C G T A C T G G A C T A C T G A G T C C G T A T G C A G T C A

NFIC/MA0161.1/Jaspar

Match Rank:9
Score:0.52
Offset:6
Orientation:reverse strand
Alignment:GCACGGTGCCATGAGC
------TGCCAA----
 A C T G A G T C C T G A G T A C A T C G C T A G C G A T A C T G A G T C A G T C C G T A C G A T A C T G T G C A A C T G A G T C
A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.51
Offset:5
Orientation:forward strand
Alignment:GCACGGTGCCATGAGC
-----TTGCCAAG---
 A C T G A G T C C T G A G T A C A T C G C T A G C G A T A C T G A G T C A G T C C G T A C G A T A C T G T G C A A C T G A G T C
A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T