Information for 13-ATAGTCAAGC (Motif 29)

C G T A A C G T C G T A A C T G A C G T A G T C C G T A C G T A A C T G A G T C
Reverse Opposite:
A C T G A G T C A C G T A C G T A C T G C G T A A G T C A C G T C G T A A C G T
p-value:1e-5
log p-value:-1.216e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.41%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets47.0 +/- 17.7bp
Average Position of motif in Background61.0 +/- 32.6bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr2e1/MA0676.1/Jaspar

Match Rank:1
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-ATAGTCAAGC
AAAAGTCAA--
 A C G T C G T A A C G T C G T A A C T G A C G T A G T C C G T A C G T A A C T G A G T C
G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A A C G T A C G T

Pax2/MA0067.1/Jaspar

Match Rank:2
Score:0.63
Offset:2
Orientation:forward strand
Alignment:ATAGTCAAGC
--AGTCACGC
 C G T A A C G T C G T A A C T G A C G T A G T C C G T A C G T A A C T G A G T C
A C G T A C G T G C T A C T A G G C A T A G T C C T G A G A T C C A T G A T C G

HMBOX1/MA0895.1/Jaspar

Match Rank:3
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-ATAGTCAAGC
ACTAGTTAAC-
 A C G T C G T A A C G T C G T A A C T G A C G T A G T C C G T A C G T A A C T G A G T C
T G C A A G T C C G A T C T G A A T C G C G A T G C A T C G T A G T C A T A G C A C G T

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:4
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----ATAGTCAAGC-
NNAATTAGTCACGGT
 A C G T A C G T A C G T A C G T C G T A A C G T C G T A A C T G A C G T A G T C C G T A C G T A A C T G A G T C A C G T
A G C T G A T C T C G A C G T A A C G T A G C T C G T A A C T G G A C T G A T C G T C A G A T C C T A G A T C G G C A T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:5
Score:0.56
Offset:1
Orientation:forward strand
Alignment:ATAGTCAAGC--
-AAGGCAAGTGT
 C G T A A C G T C G T A A C T G A C G T A G T C C G T A C G T A A C T G A G T C A C G T A C G T
A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

Nr2e3/MA0164.1/Jaspar

Match Rank:6
Score:0.55
Offset:5
Orientation:forward strand
Alignment:ATAGTCAAGC--
-----CAAGCTT
 C G T A A C G T C G T A A C T G A C G T A G T C C G T A C G T A A C T G A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G A T C C G T A C G T A A T C G A G T C A C G T A C G T

Sox17/MA0078.1/Jaspar

Match Rank:7
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---ATAGTCAAGC
CTCATTGTC----
 A C G T A C G T A C G T C G T A A C G T C G T A A C T G A C G T A G T C C G T A C G T A A C T G A G T C
G A C T G A C T G A T C C G T A A G C T A C G T A C T G A C G T A T G C A C G T A C G T A C G T A C G T

PH0168.1_Hnf1b/Jaspar

Match Rank:8
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----ATAGTCAAGC---
ANNNCTAGTTAACNGNN
 A C G T A C G T A C G T A C G T C G T A A C G T C G T A A C T G A C G T A G T C C G T A C G T A A C T G A G T C A C G T A C G T A C G T
C T G A T A G C C T A G T C A G A G T C G C A T T C G A C T A G C A G T C G A T C G T A C G T A A G T C T G C A C T A G T G A C G C A T

MEIS1/MA0498.2/Jaspar

Match Rank:9
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:ATAGTCAAGC
-NTGTCAN--
 C G T A A C G T C G T A A C T G A C G T A G T C C G T A C G T A A C T G A G T C
A C G T G A T C G A C T C T A G A C G T A T G C C G T A C G T A A C G T A C G T

PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer

Match Rank:10
Score:0.53
Offset:-5
Orientation:forward strand
Alignment:-----ATAGTCAAGC-----
NGTGTTCAVTSAAGCGKAAA
 A C G T A C G T A C G T A C G T A C G T C G T A A C G T C G T A A C T G A C G T A G T C C G T A C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T
A G C T T A C G C G A T T C A G A G C T A C G T G A T C C T G A T A G C A G C T A T G C C T G A C G T A A T C G A G T C C T A G A C T G C T G A G T C A T C G A