Information for 11-CTGATAATCBCTC (Motif 21)

A G T C A C G T T A C G C G T A A C G T C G T A C T G A A C G T A G T C A C G T A G T C C G A T A G T C
Reverse Opposite:
A C T G C G T A A C T G T C G A C T A G C G T A A G C T A C G T G T C A A C G T A T G C C G T A A C T G
p-value:1e-9
log p-value:-2.185e+01
Information Content per bp:1.845
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.81%
Number of Background Sequences with motif5.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets48.0 +/- 25.7bp
Average Position of motif in Background75.5 +/- 20.2bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0139.1_Pitx3/Jaspar

Match Rank:1
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CTGATAATCBCTC-
GNNAGCTAATCCCCCN
 A C G T A C G T A G T C A C G T T A C G C G T A A C G T C G T A C T G A A C G T A G T C A C G T A G T C C G A T A G T C A C G T
A T C G T A C G G A T C G T C A T A C G G T A C C G A T C G T A C T G A A C G T A G T C A G T C G A T C A T G C A G T C A G C T

PH0017.1_Cux1_2/Jaspar

Match Rank:2
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CTGATAATCBCTC
TAATGATGATCACTA
 A C G T A C G T A G T C A C G T T A C G C G T A A C G T C G T A C T G A A C G T A G T C A C G T A G T C C G A T A G T C
C G A T T G C A T C G A A G C T C A T G G C T A C G A T C T A G C G T A C A G T G A T C T C G A G T A C C G A T C G T A

PH0137.1_Pitx1/Jaspar

Match Rank:3
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CTGATAATCBCTC---
NTTGTTAATCCCTCTNN
 A C G T A G T C A C G T T A C G C G T A A C G T C G T A C T G A A C G T A G T C A C G T A G T C C G A T A G T C A C G T A C G T A C G T
C G T A C A G T G A C T C A T G G A C T C G A T C G T A C G T A A C G T G A T C A G T C A G T C G A C T A G T C A G C T T G C A C T G A

GSC/MA0648.1/Jaspar

Match Rank:4
Score:0.60
Offset:2
Orientation:forward strand
Alignment:CTGATAATCBCTC
--GCTAATCCCC-
 A G T C A C G T T A C G C G T A A C G T C G T A C T G A A C G T A G T C A C G T A G T C C G A T A G T C
A C G T A C G T T A C G G A T C A G C T C T G A C G T A A C G T A G T C A G T C A T G C G A T C A C G T

PH0123.1_Obox3/Jaspar

Match Rank:5
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CTGATAATCBCTC---
ATAGTTAATCCCCCNNA
 A C G T A G T C A C G T T A C G C G T A A C G T C G T A C T G A A C G T A G T C A C G T A G T C C G A T A G T C A C G T A C G T A C G T
C T G A C A G T G C T A C A T G G C A T G C A T C G T A G T C A C A G T G T A C G A T C G A T C G A T C A T G C A G C T T A G C C G T A

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:6
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:CTGATAATCBCTC
---YTAATCCY--
 A G T C A C G T T A C G C G T A A C G T C G T A C T G A A C G T A G T C A C G T A G T C C G A T A G T C
A C G T A C G T A C G T G A T C G C A T C G T A C G T A A C G T G A T C G A T C A G T C A C G T A C G T

PH0122.1_Obox2/Jaspar

Match Rank:7
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CTGATAATCBCTC---
ATAGTTAATCCCCCTCA
 A C G T A G T C A C G T T A C G C G T A A C G T C G T A C T G A A C G T A G T C A C G T A G T C C G A T A G T C A C G T A C G T A C G T
C T G A C A G T G C T A C A T G G C A T G C A T C G T A G C T A C A G T G T A C A G T C G A T C G A T C G A T C A G C T T G A C G C T A

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:8
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CTGATAATCBCTC
--NYTAATCCYB-
 A G T C A C G T T A C G C G T A A C G T C G T A C T G A A C G T A G T C A C G T A G T C C G A T A G T C
A C G T A C G T A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T A C G T

PITX3/MA0714.1/Jaspar

Match Rank:9
Score:0.58
Offset:2
Orientation:forward strand
Alignment:CTGATAATCBCTC
--CTTAATCCC--
 A G T C A C G T T A C G C G T A A C G T C G T A C T G A A C G T A G T C A C G T A G T C C G A T A G T C
A C G T A C G T T A G C G A C T G C A T C T G A C T G A C A G T G T A C A G T C G A T C A C G T A C G T

Pitx1/MA0682.1/Jaspar

Match Rank:10
Score:0.58
Offset:3
Orientation:forward strand
Alignment:CTGATAATCBCTC
---TTAATCCC--
 A G T C A C G T T A C G C G T A A C G T C G T A C T G A A C G T A G T C A C G T A G T C C G A T A G T C
A C G T A C G T A C G T G A C T G C A T T C G A C G T A C A G T G A T C G A T C G T A C A C G T A C G T