Information for 13-CTRGCCAAWGGCAGCC (Motif 16)

A T G C A C G T C T A G A C T G G T A C A G T C C T G A C T G A G C A T A T C G A T C G A T G C T C G A T A C G A T G C A G T C
Reverse Opposite:
T C A G A T C G A T G C A C G T A T C G A T G C A T G C C G T A A G C T A G C T C T A G A C T G G T A C A G T C T G C A A T C G
p-value:1e-10
log p-value:-2.513e+01
Information Content per bp:1.727
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.36%
Number of Background Sequences with motif24.8
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets57.5 +/- 23.8bp
Average Position of motif in Background38.6 +/- 24.7bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL004.1_CCAAT-box/Jaspar

Match Rank:1
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CTRGCCAAWGGCAGCC
ACTAGCCAATCA-----
 A C G T A T G C A C G T C T A G A C T G G T A C A G T C C T G A C T G A G C A T A T C G A T C G A T G C T C G A T A C G A T G C A G T C
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T A C G T A C G T A C G T A C G T

NFY(CCAAT)/Promoter/Homer

Match Rank:2
Score:0.60
Offset:2
Orientation:forward strand
Alignment:CTRGCCAAWGGCAGCC
--AGCCAATCGG----
 A T G C A C G T C T A G A C T G G T A C A G T C C T G A C T G A G C A T A T C G A T C G A T G C T C G A T A C G A T G C A G T C
A C G T A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:3
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:CTRGCCAAWGGCAGCC
--TGCCAA--------
 A T G C A C G T C T A G A C T G G T A C A G T C C T G A C T G A G C A T A T C G A T C G A T G C T C G A T A C G A T G C A G T C
A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CTRGCCAAWGGCAGCC
CGTGCCAAG-------
 A T G C A C G T C T A G A C T G G T A C A G T C C T G A C T G A G C A T A T C G A T C G A T G C T C G A T A C G A T G C A G T C
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

TFAP2C(var.2)/MA0814.1/Jaspar

Match Rank:5
Score:0.57
Offset:2
Orientation:forward strand
Alignment:CTRGCCAAWGGCAGCC
--AGCCTCAGGCA---
 A T G C A C G T C T A G A C T G G T A C A G T C C T G A C T G A G C A T A T C G A T C G A T G C T C G A T A C G A T G C A G T C
A C G T A C G T G T C A T A C G A T G C A G T C A G C T T A G C T C G A T C A G A T C G T A G C C G T A A C G T A C G T A C G T

TFAP2B(var.2)/MA0812.1/Jaspar

Match Rank:6
Score:0.57
Offset:2
Orientation:forward strand
Alignment:CTRGCCAAWGGCAGCC
--AGCCTCAGGCA---
 A T G C A C G T C T A G A C T G G T A C A G T C C T G A C T G A G C A T A T C G A T C G A T G C T C G A T A C G A T G C A G T C
A C G T A C G T G T C A T A C G A T G C A G T C A G C T T A G C T G C A T C A G T A C G T A G C C G T A A C G T A C G T A C G T

PB0191.1_Tcfap2c_2/Jaspar

Match Rank:7
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CTRGCCAAWGGCAGCC
CCGCCCAAGGGCAG--
 A T G C A C G T C T A G A C T G G T A C A G T C C T G A C T G A G C A T A T C G A T C G A T G C T C G A T A C G A T G C A G T C
A T G C G A T C T C A G G T A C G A T C G A T C C G T A G C T A C T A G C T A G C A T G A G T C C G T A C T A G A C G T A C G T

TFAP2A/MA0003.3/Jaspar

Match Rank:8
Score:0.55
Offset:2
Orientation:forward strand
Alignment:CTRGCCAAWGGCAGCC
--CGCCTCAGGCA---
 A T G C A C G T C T A G A C T G G T A C A G T C C T G A C T G A G C A T A T C G A T C G A T G C T C G A T A C G A T G C A G T C
A C G T A C G T G T A C T A C G A T G C A G T C A G C T T A G C T G C A T C A G A T C G T A G C C G T A A C G T A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:9
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:CTRGCCAAWGGCAGCC
---RACAAWGG-----
 A T G C A C G T C T A G A C T G G T A C A G T C C T G A C T G A G C A T A T C G A T C G A T G C T C G A T A C G A T G C A G T C
A C G T A C G T A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T

Sox6/MA0515.1/Jaspar

Match Rank:10
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:CTRGCCAAWGGCAGCC
-AAAACAATGG-----
 A T G C A C G T C T A G A C T G G T A C A G T C C T G A C T G A G C A T A T C G A T C G A T G C T C G A T A C G A T G C A G T C
A C G T T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G A C G T A C G T A C G T A C G T A C G T