Information for 11-CCATRAAAGGTGGGGA (Motif 14)

G T A C G A T C G T C A A C G T C T G A C G T A T C G A C G T A C T A G C T A G A C G T C T A G C A T G C T A G A T C G C G T A
Reverse Opposite:
C G A T A T G C G A T C G A T C A G T C C G T A A G T C A G T C G A C T A G C T A C G T A G C T G T C A A C G T C A T G A C T G
p-value:1e-11
log p-value:-2.595e+01
Information Content per bp:1.707
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.22%
Number of Background Sequences with motif15.3
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets46.9 +/- 19.7bp
Average Position of motif in Background37.3 +/- 23.9bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX2/MA0465.1/Jaspar

Match Rank:1
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CCATRAAAGGTGGGGA
AAGCCATAAAA--------
 A C G T A C G T A C G T G T A C G A T C G T C A A C G T C T G A C G T A T C G A C G T A C T A G C T A G A C G T C T A G C A T G C T A G A T C G C G T A
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

CDX1/MA0878.1/Jaspar

Match Rank:2
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CCATRAAAGGTGGGGA
GCAATAAAA--------
 A C G T G T A C G A T C G T C A A C G T C T G A C G T A T C G A C G T A C T A G C T A G A C G T C T A G C A T G C T A G A T C G C G T A
T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

TATA-Box(TBP)/Promoter/Homer

Match Rank:3
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CCATRAAAGGTGGGGA
GNCTATAAAAGG------
 A C G T A C G T G T A C G A T C G T C A A C G T C T G A C G T A T C G A C G T A C T A G C T A G A C G T C T A G C A T G C T A G A T C G C G T A
A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:4
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CCATRAAAGGTGGGGA
NCYAATAAAA--------
 A C G T A C G T G T A C G A T C G T C A A C G T C T G A C G T A T C G A C G T A C T A G C T A G A C G T C T A G C A T G C T A G A T C G C G T A
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MZF1/MA0056.1/Jaspar

Match Rank:5
Score:0.56
Offset:10
Orientation:forward strand
Alignment:CCATRAAAGGTGGGGA
----------TGGGGA
 G T A C G A T C G T C A A C G T C T G A C G T A T C G A C G T A C T A G C T A G A C G T C T A G C A T G C T A G A T C G C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C T G C T A G A C T G A C T G C T G A

HOXD13/MA0909.1/Jaspar

Match Rank:6
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CCATRAAAGGTGGGGA
CCAATAAAAA-------
 A C G T G T A C G A T C G T C A A C G T C T G A C G T A T C G A C G T A C T A G C T A G A C G T C T A G C A T G C T A G A T C G C G T A
A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

HOXB13/MA0901.1/Jaspar

Match Rank:7
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CCATRAAAGGTGGGGA
CCAATAAAAC-------
 A C G T G T A C G A T C G T C A A C G T C T G A C G T A T C G A C G T A C T A G C T A G A C G T C T A G C A T G C T A G A T C G C G T A
T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:8
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CCATRAAAGGTGGGGA
NGCAATTAAA--------
 A C G T A C G T G T A C G A T C G T C A A C G T C T G A C G T A T C G A C G T A C T A G C T A G A C G T C T A G C A T G C T A G A T C G C G T A
T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

TBP/MA0108.2/Jaspar

Match Rank:9
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CCATRAAAGGTGGGGA
GTATAAAAGGCGGGG-
 G T A C G A T C G T C A A C G T C T G A C G T A T C G A C G T A C T A G C T A G A C G T C T A G C A T G C T A G A T C G C G T A
T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G A C G T

POL012.1_TATA-Box/Jaspar

Match Rank:10
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CCATRAAAGGTGGGGA
GTATAAAAGGCGGGG-
 G T A C G A T C G T C A A C G T C T G A C G T A T C G A C G T A C T A G C T A G A C G T C T A G C A T G C T A G A T C G C G T A
T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G A C G T