Information for 9-TAACAATCCATTDTTT (Motif 12)

G C A T T G C A C G T A A G T C T G C A C G T A C G A T G T A C A G T C T C G A G A C T A C G T C A T G A G C T A C G T A C G T
Reverse Opposite:
C G T A G T C A C T G A G A T C C G T A C T G A A C G T C T A G A C T G C G T A A C G T A C G T T C A G A C G T A C G T C G T A
p-value:1e-11
log p-value:-2.724e+01
Information Content per bp:1.729
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.08%
Number of Background Sequences with motif8.7
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets49.8 +/- 27.4bp
Average Position of motif in Background67.6 +/- 16.5bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:1
Score:0.64
Offset:7
Orientation:forward strand
Alignment:TAACAATCCATTDTTT-
-------CCATTGTTYB
 G C A T T G C A C G T A A G T C T G C A C G T A C G A T G T A C A G T C T C G A G A C T A C G T C A T G A G C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G

PH0126.1_Obox6/Jaspar

Match Rank:2
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:TAACAATCCATTDTTT
CNATAATCCGNTTNT-
 G C A T T G C A C G T A A G T C T G C A C G T A C G A T G T A C A G T C T C G A G A C T A C G T C A T G A G C T A C G T A C G T
T A G C C T G A G C T A C G A T C G T A C G T A A C G T G T A C A G T C A T C G G A C T C G A T G A C T C G A T C A G T A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:3
Score:0.62
Offset:6
Orientation:reverse strand
Alignment:TAACAATCCATTDTTT
------NCCATTGTTY
 G C A T T G C A C G T A A G T C T G C A C G T A C G A T G T A C A G T C T C G A G A C T A C G T C A T G A G C T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T A G A G T C G A T C G C T A C G A T A C G T A T C G A C G T A G C T G A C T

SOX9/MA0077.1/Jaspar

Match Rank:4
Score:0.61
Offset:7
Orientation:forward strand
Alignment:TAACAATCCATTDTTT
-------CCATTGTTC
 G C A T T G C A C G T A A G T C T G C A C G T A C G A T G T A C A G T C T C G A G A C T A C G T C A T G A G C T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C G A T C G C T A C A G T C G A T T A C G C G A T G C A T G A T C

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.60
Offset:6
Orientation:forward strand
Alignment:TAACAATCCATTDTTT
------NCCATTGTTC
 G C A T T G C A C G T A A G T C T G C A C G T A C G A T G T A C A G T C T C G A G A C T A C G T C A T G A G C T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C

Sox2/MA0143.3/Jaspar

Match Rank:6
Score:0.60
Offset:7
Orientation:forward strand
Alignment:TAACAATCCATTDTTT
-------CCTTTGTT-
 G C A T T G C A C G T A A G T C T G C A C G T A C G A T G T A C A G T C T C G A G A C T A C G T C A T G A G C T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A C G T

PH0088.1_Isl2/Jaspar

Match Rank:7
Score:0.60
Offset:1
Orientation:forward strand
Alignment:TAACAATCCATTDTTT-
-CAAAATCAATTAATTT
 G C A T T G C A C G T A A G T C T G C A C G T A C G A T G T A C A G T C T C G A G A C T A C G T C A T G A G C T A C G T A C G T A C G T
A C G T G T A C G C T A G T C A G T C A G T C A A G C T G A T C G T C A G T C A G A C T G A C T C G T A C T G A C A G T C G A T G A C T

Sox6/MA0515.1/Jaspar

Match Rank:8
Score:0.60
Offset:7
Orientation:forward strand
Alignment:TAACAATCCATTDTTT-
-------CCATTGTTTT
 G C A T T G C A C G T A A G T C T G C A C G T A C G A T G T A C A G T C T C G A G A C T A C G T C A T G A G C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T

ONECUT2/MA0756.1/Jaspar

Match Rank:9
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:TAACAATCCATTDTTT
--ATTATCGATTTTTT
 G C A T T G C A C G T A A G T C T G C A C G T A C G A T G T A C A G T C T C G A G A C T A C G T C A T G A G C T A C G T A C G T
A C G T A C G T C G T A C G A T G C A T C G T A C G A T A G T C C A T G G T C A G A C T G A C T C G A T G C A T G A C T A G C T

PB0061.1_Sox11_1/Jaspar

Match Rank:10
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:TAACAATCCATTDTTT----
---NNNTCCTTTGTTCTNNN
 G C A T T G C A C G T A A G T C T G C A C G T A C G A T G T A C A G T C T C G A G A C T A C G T C A T G A G C T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G A T C G T A T C A G A G C T A G T C G A T C C G A T A C G T C G A T A C T G C G A T A G C T G A T C G C A T G C A T T G C A C G A T