Information for 6-GRCCTGCAGCCAA (Motif 11)

A C T G T C A G A G T C A G T C C G A T A T C G A G T C C G T A A C T G A G T C A G T C G T C A C T G A
Reverse Opposite:
A G C T A C G T A C T G A C T G A G T C G A C T C T A G A T G C C G T A A C T G A C T G A G T C A G T C
p-value:1e-11
log p-value:-2.731e+01
Information Content per bp:1.801
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.81%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets50.3 +/- 26.1bp
Average Position of motif in Background26.3 +/- 28.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--GRCCTGCAGCCAA-
TTGGCANNNTGCCAAG
 A C G T A C G T A C T G T C A G A G T C A G T C C G A T A T C G A G T C C G T A A C T G A G T C A G T C G T C A C T G A A C G T
G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-GRCCTGCAGCCAA
TGGCAGNCTGCCAG
 A C G T A C T G T C A G A G T C A G T C C G A T A T C G A G T C C G T A A C T G A G T C A G T C G T C A C T G A
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G

NFIC/MA0161.1/Jaspar

Match Rank:3
Score:0.67
Offset:7
Orientation:reverse strand
Alignment:GRCCTGCAGCCAA
-------TGCCAA
 A C T G T C A G A G T C A G T C C G A T A T C G A G T C C G T A A C T G A G T C A G T C G T C A C T G A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.66
Offset:5
Orientation:forward strand
Alignment:GRCCTGCAGCCAA-
-----CGTGCCAAG
 A C T G T C A G A G T C A G T C C G A T A T C G A G T C C G T A A C T G A G T C A G T C G T C A C T G A A C G T
A C G T A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:5
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-GRCCTGCAGCCAA
TGGCACCATGCCAA
 A C G T A C T G T C A G A G T C A G T C C G A T A T C G A G T C C G T A A C T G A G T C A G T C G T C A C T G A
A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A

POL004.1_CCAAT-box/Jaspar

Match Rank:6
Score:0.60
Offset:4
Orientation:forward strand
Alignment:GRCCTGCAGCCAA---
----ACTAGCCAATCA
 A C T G T C A G A G T C A G T C C G A T A T C G A G T C C G T A A C T G A G T C A G T C G T C A C T G A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

NFIA/MA0670.1/Jaspar

Match Rank:7
Score:0.60
Offset:5
Orientation:forward strand
Alignment:GRCCTGCAGCCAA--
-----GGTGCCAAGT
 A C T G T C A G A G T C A G T C C G A T A T C G A G T C C G T A A C T G A G T C A G T C G T C A C T G A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:8
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--GRCCTGCAGCCAA
NTGCCCANNGGTNA-
 A C G T A C G T A C T G T C A G A G T C A G T C C G A T A T C G A G T C C G T A A C T G A G T C A G T C G T C A C T G A
T G A C G C A T T C A G G T A C G A T C A G T C C G T A T A C G T C G A C T A G T C A G G A C T C A T G C T G A A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:9
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:GRCCTGCAGCCAA
-----BCAGACWA
 A C T G T C A G A G T C A G T C C G A T A T C G A G T C C G T A A C T G A G T C A G T C G T C A C T G A
A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.57
Offset:6
Orientation:forward strand
Alignment:GRCCTGCAGCCAA-
------TTGCCAAG
 A C T G T C A G A G T C A G T C C G A T A T C G A G T C C G T A A C T G A G T C A G T C G T C A C T G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G