Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 740)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 46072)	% of Background Sequences with Motif
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-383	-8.828e+02	0.0000	419.0	56.62%	1736.9	3.77%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-381	-8.786e+02	0.0000	435.0	58.78%	2006.0	4.36%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-374	-8.627e+02	0.0000	435.0	58.78%	2083.9	4.53%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-367	-8.469e+02	0.0000	407.0	55.00%	1711.4	3.72%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-359	-8.268e+02	0.0000	435.0	58.78%	2269.2	4.93%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-356	-8.209e+02	0.0000	384.0	51.89%	1487.3	3.23%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-322	-7.418e+02	0.0000	317.0	42.84%	936.2	2.03%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-258	-5.956e+02	0.0000	249.0	33.65%	658.4	1.43%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-122	-2.822e+02	0.0000	138.0	18.65%	484.3	1.05%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-37	-8.569e+01	0.0000	41.0	5.54%	134.8	0.29%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-36	-8.314e+01	0.0000	60.0	8.11%	416.2	0.90%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-26	-6.153e+01	0.0000	32.0	4.32%	126.7	0.28%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-25	-5.918e+01	0.0000	33.0	4.46%	149.4	0.32%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-20	-4.722e+01	0.0000	55.0	7.43%	705.0	1.53%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-20	-4.629e+01	0.0000	81.0	10.95%	1501.6	3.26%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-15	-3.640e+01	0.0000	55.0	7.43%	906.3	1.97%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-15	-3.465e+01	0.0000	84.0	11.35%	1956.9	4.25%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-14	-3.445e+01	0.0000	42.0	5.68%	569.8	1.24%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-14	-3.373e+01	0.0000	81.0	10.95%	1875.2	4.07%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-11	-2.654e+01	0.0000	74.0	10.00%	1875.3	4.07%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-10	-2.466e+01	0.0000	69.0	9.32%	1754.1	3.81%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-9	-2.152e+01	0.0000	60.0	8.11%	1527.1	3.32%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-7	-1.784e+01	0.0000	69.0	9.32%	2074.4	4.51%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-7	-1.723e+01	0.0000	58.0	7.84%	1637.1	3.56%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-7	-1.714e+01	0.0000	68.0	9.19%	2069.7	4.50%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-7	-1.623e+01	0.0000	90.0	12.16%	3128.8	6.80%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-6	-1.574e+01	0.0000	76.0	10.27%	2511.0	5.45%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-6	-1.416e+01	0.0000	25.0	3.38%	489.0	1.06%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-5	-1.262e+01	0.0000	38.0	5.14%	1031.4	2.24%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e-5	-1.245e+01	0.0000	9.0	1.22%	73.9	0.16%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-5	-1.243e+01	0.0000	53.0	7.16%	1681.8	3.65%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-5	-1.215e+01	0.0001	72.0	9.73%	2577.1	5.60%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-5	-1.157e+01	0.0001	50.0	6.76%	1600.4	3.48%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-4	-1.095e+01	0.0002	250.0	33.78%	12349.2	26.82%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-4	-1.074e+01	0.0002	37.0	5.00%	1081.1	2.35%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-4	-1.065e+01	0.0002	18.0	2.43%	351.9	0.76%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-4	-9.507e+00	0.0007	69.0	9.32%	2651.5	5.76%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-4	-9.319e+00	0.0009	28.0	3.78%	776.9	1.69%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e-3	-9.170e+00	0.0010	39.0	5.27%	1257.9	2.73%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-3	-8.839e+00	0.0013	43.0	5.81%	1460.8	3.17%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-3	-8.832e+00	0.0013	54.0	7.30%	1978.6	4.30%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-3	-8.673e+00	0.0015	52.0	7.03%	1895.0	4.12%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-3	-8.404e+00	0.0019	10.0	1.35%	152.2	0.33%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-3	-8.381e+00	0.0019	29.0	3.92%	865.3	1.88%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-3	-8.363e+00	0.0019	13.0	1.76%	246.7	0.54%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-3	-8.335e+00	0.0019	19.0	2.57%	461.5	1.00%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-3	-8.302e+00	0.0019	10.0	1.35%	155.0	0.34%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-3	-8.279e+00	0.0019	25.0	3.38%	702.5	1.53%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e-3	-8.206e+00	0.0020	11.0	1.49%	186.7	0.41%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e-3	-8.206e+00	0.0020	11.0	1.49%	186.7	0.41%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-3	-8.182e+00	0.0020	56.0	7.57%	2130.6	4.63%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e-3	-8.114e+00	0.0021	55.0	7.43%	2087.5	4.53%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-3	-8.050e+00	0.0022	26.0	3.51%	755.2	1.64%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-3	-7.916e+00	0.0025	17.0	2.30%	401.1	0.87%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-3	-7.872e+00	0.0025	23.0	3.11%	639.9	1.39%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-3	-7.823e+00	0.0026	47.0	6.35%	1724.6	3.75%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-3	-7.799e+00	0.0026	60.0	8.11%	2363.9	5.13%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-3	-7.630e+00	0.0030	33.0	4.46%	1085.8	2.36%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e-3	-7.625e+00	0.0030	18.0	2.43%	450.5	0.98%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e-3	-7.489e+00	0.0034	12.0	1.62%	236.6	0.51%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e-3	-7.463e+00	0.0034	26.0	3.51%	786.3	1.71%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-3	-7.387e+00	0.0036	56.0	7.57%	2203.9	4.79%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-3	-7.164e+00	0.0045	41.0	5.54%	1490.8	3.24%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-3	-7.085e+00	0.0048	27.0	3.65%	851.8	1.85%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-3	-6.978e+00	0.0052	62.0	8.38%	2547.0	5.53%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-3	-6.944e+00	0.0053	43.0	5.81%	1604.3	3.48%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-3	-6.932e+00	0.0053	66.0	8.92%	2757.9	5.99%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-2	-6.781e+00	0.0061	21.0	2.84%	610.0	1.32%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-2	-6.758e+00	0.0061	8.0	1.08%	126.8	0.28%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-2	-6.740e+00	0.0062	93.0	12.57%	4206.7	9.14%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-2	-6.635e+00	0.0067	40.0	5.41%	1485.3	3.23%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-2	-6.600e+00	0.0069	73.0	9.86%	3160.7	6.87%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-2	-6.598e+00	0.0069	22.0	2.97%	661.4	1.44%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e-2	-6.567e+00	0.0069	9.0	1.22%	161.5	0.35%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-2	-6.565e+00	0.0069	18.0	2.43%	495.1	1.08%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-2	-6.531e+00	0.0070	17.0	2.30%	456.3	0.99%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-2	-6.437e+00	0.0076	42.0	5.68%	1599.5	3.47%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-2	-6.424e+00	0.0076	56.0	7.57%	2300.2	5.00%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-2	-6.297e+00	0.0085	16.0	2.16%	426.4	0.93%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-2	-6.262e+00	0.0087	34.0	4.59%	1228.5	2.67%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e-2	-6.220e+00	0.0089	5.0	0.68%	54.1	0.12%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-2	-6.155e+00	0.0094	24.0	3.24%	774.4	1.68%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-2	-6.050e+00	0.0103	6.0	0.81%	82.8	0.18%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-2	-5.990e+00	0.0108	6.0	0.81%	83.9	0.18%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e-2	-5.942e+00	0.0112	42.0	5.68%	1644.2	3.57%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-2	-5.935e+00	0.0112	37.0	5.00%	1399.3	3.04%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-2	-5.918e+00	0.0113	25.0	3.38%	835.0	1.81%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e-2	-5.752e+00	0.0131	43.0	5.81%	1712.0	3.72%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-2	-5.729e+00	0.0133	18.0	2.43%	536.7	1.17%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-2	-5.604e+00	0.0149	44.0	5.95%	1777.6	3.86%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-2	-5.576e+00	0.0151	29.0	3.92%	1044.4	2.27%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-2	-5.506e+00	0.0161	63.0	8.51%	2771.7	6.02%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-2	-5.499e+00	0.0161	16.0	2.16%	463.9	1.01%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-2	-5.479e+00	0.0162	20.0	2.70%	637.2	1.38%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-2	-5.459e+00	0.0163	16.0	2.16%	465.7	1.01%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-2	-5.364e+00	0.0177	38.0	5.14%	1500.5	3.26%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-2	-5.312e+00	0.0185	28.0	3.78%	1017.3	2.21%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e-2	-5.289e+00	0.0188	4.0	0.54%	42.5	0.09%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-2	-5.166e+00	0.0210	18.0	2.43%	567.1	1.23%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-2	-5.128e+00	0.0216	47.0	6.35%	1981.2	4.30%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-2	-5.125e+00	0.0216	9.0	1.22%	201.4	0.44%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-2	-5.116e+00	0.0216	37.0	5.00%	1474.2	3.20%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-2	-4.960e+00	0.0248	21.0	2.84%	715.5	1.55%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-2	-4.946e+00	0.0249	47.0	6.35%	2002.2	4.35%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e-2	-4.931e+00	0.0250	14.0	1.89%	407.4	0.88%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-2	-4.916e+00	0.0252	45.0	6.08%	1902.9	4.13%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-2	-4.830e+00	0.0272	10.0	1.35%	249.6	0.54%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e-2	-4.783e+00	0.0282	16.0	2.16%	501.6	1.09%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-2	-4.718e+00	0.0298	206.0	27.84%	11049.8	24.00%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-2	-4.670e+00	0.0310	126.0	17.03%	6399.1	13.90%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-2	-4.631e+00	0.0320	152.0	20.54%	7905.9	17.17%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e-1	-4.520e+00	0.0354	9.0	1.22%	222.8	0.48%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-1	-4.517e+00	0.0354	18.0	2.43%	607.6	1.32%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e-1	-4.478e+00	0.0363	52.0	7.03%	2323.7	5.05%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-1	-4.416e+00	0.0383	30.0	4.05%	1192.1	2.59%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-1	-4.345e+00	0.0407	21.0	2.84%	759.5	1.65%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-1	-4.208e+00	0.0463	162.0	21.89%	8591.1	18.66%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e-1	-4.204e+00	0.0463	35.0	4.73%	1467.2	3.19%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-1	-4.195e+00	0.0463	23.0	3.11%	867.6	1.88%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-1	-4.096e+00	0.0505	26.0	3.51%	1023.0	2.22%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-1	-4.083e+00	0.0507	19.0	2.57%	684.1	1.49%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e-1	-4.068e+00	0.0510	7.0	0.95%	162.8	0.35%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-1	-3.924e+00	0.0585	5.0	0.68%	95.7	0.21%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-1	-3.857e+00	0.0620	22.0	2.97%	847.8	1.84%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-1	-3.837e+00	0.0628	60.0	8.11%	2850.9	6.19%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e-1	-3.810e+00	0.0640	47.0	6.35%	2148.1	4.67%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-1	-3.661e+00	0.0736	27.0	3.65%	1116.2	2.42%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e-1	-3.627e+00	0.0756	13.0	1.76%	436.0	0.95%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-1	-3.607e+00	0.0766	73.0	9.86%	3612.5	7.85%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-1	-3.549e+00	0.0805	13.0	1.76%	441.8	0.96%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-1	-3.479e+00	0.0856	48.0	6.49%	2251.1	4.89%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e-1	-3.461e+00	0.0866	18.0	2.43%	685.9	1.49%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-1	-3.415e+00	0.0899	5.0	0.68%	109.2	0.24%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-1	-3.350e+00	0.0953	42.0	5.68%	1945.3	4.23%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e-1	-3.335e+00	0.0960	45.0	6.08%	2110.4	4.58%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-1	-3.301e+00	0.0986	32.0	4.32%	1417.0	3.08%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-1	-3.277e+00	0.1003	32.0	4.32%	1420.8	3.09%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-1	-3.231e+00	0.1043	33.0	4.46%	1479.2	3.21%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-1	-3.215e+00	0.1051	87.0	11.76%	4487.6	9.75%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-1	-3.209e+00	0.1051	25.0	3.38%	1062.8	2.31%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-1	-3.181e+00	0.1073	41.0	5.54%	1916.7	4.16%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-1	-3.147e+00	0.1101	27.0	3.65%	1173.1	2.55%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-1	-3.124e+00	0.1119	20.0	2.70%	815.7	1.77%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e-1	-3.106e+00	0.1132	53.0	7.16%	2588.3	5.62%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-1	-3.083e+00	0.1151	44.0	5.95%	2095.0	4.55%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-1	-3.005e+00	0.1235	2.0	0.27%	22.2	0.05%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e-1	-2.928e+00	0.1325	73.0	9.86%	3751.8	8.15%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-1	-2.908e+00	0.1342	7.0	0.95%	210.0	0.46%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-1	-2.792e+00	0.1497	193.0	26.08%	10859.8	23.59%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e-1	-2.686e+00	0.1654	21.0	2.84%	913.9	1.99%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-1	-2.591e+00	0.1807	27.0	3.65%	1244.9	2.70%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-1	-2.590e+00	0.1807	73.0	9.86%	3829.6	8.32%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e-1	-2.587e+00	0.1807	4.0	0.54%	99.0	0.21%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e-1	-2.525e+00	0.1893	49.0	6.62%	2473.3	5.37%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-1	-2.513e+00	0.1903	110.0	14.86%	6008.6	13.05%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e-1	-2.461e+00	0.1992	9.0	1.22%	327.0	0.71%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-1	-2.404e+00	0.2094	33.0	4.46%	1600.1	3.48%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-1	-2.352e+00	0.2192	93.0	12.57%	5056.7	10.98%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e-1	-2.308e+00	0.2278	27.0	3.65%	1285.9	2.79%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-2.293e+00	0.2297	41.0	5.54%	2067.4	4.49%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-2.252e+00	0.2377	30.0	4.05%	1459.9	3.17%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-2.240e+00	0.2391	1.0	0.14%	7.3	0.02%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-2.204e+00	0.2464	66.0	8.92%	3520.0	7.65%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-2.192e+00	0.2478	5.0	0.68%	157.6	0.34%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-2.057e+00	0.2819	7.0	0.95%	259.3	0.56%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-1.979e+00	0.3030	15.0	2.03%	679.0	1.48%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-1.969e+00	0.3043	12.0	1.62%	521.6	1.13%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-1.956e+00	0.3064	4.0	0.54%	124.1	0.27%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-1.954e+00	0.3064	19.0	2.57%	899.4	1.95%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-1.944e+00	0.3064	26.0	3.51%	1289.0	2.80%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-1.907e+00	0.3161	1.0	0.14%	10.4	0.02%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-1.890e+00	0.3197	64.0	8.65%	3488.7	7.58%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e0	-1.865e+00	0.3259	17.0	2.30%	802.5	1.74%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-1.842e+00	0.3315	14.0	1.89%	642.3	1.40%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-1.805e+00	0.3422	10.0	1.35%	433.9	0.94%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-1.797e+00	0.3431	12.0	1.62%	540.3	1.17%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-1.796e+00	0.3431	3.0	0.41%	87.9	0.19%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-1.792e+00	0.3431	57.0	7.70%	3105.5	6.75%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-1.776e+00	0.3445	10.0	1.35%	436.9	0.95%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-1.762e+00	0.3472	12.0	1.62%	544.5	1.18%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-1.723e+00	0.3592	16.0	2.16%	767.9	1.67%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-1.691e+00	0.3688	24.0	3.24%	1220.4	2.65%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-1.659e+00	0.3785	56.0	7.57%	3084.6	6.70%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-1.641e+00	0.3834	29.0	3.92%	1515.4	3.29%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-1.638e+00	0.3834	30.0	4.05%	1573.1	3.42%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-1.598e+00	0.3961	6.0	0.81%	244.3	0.53%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-1.552e+00	0.4122	7.0	0.95%	300.7	0.65%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-1.540e+00	0.4149	1.0	0.14%	15.8	0.03%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-1.441e+00	0.4557	44.0	5.95%	2439.0	5.30%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-1.425e+00	0.4607	6.0	0.81%	259.6	0.56%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-1.401e+00	0.4694	22.0	2.97%	1161.7	2.52%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-1.350e+00	0.4917	19.0	2.57%	998.5	2.17%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-1.344e+00	0.4921	9.0	1.22%	431.6	0.94%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-1.284e+00	0.5194	63.0	8.51%	3624.9	7.87%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-1.252e+00	0.5338	62.0	8.38%	3576.4	7.77%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-1.250e+00	0.5338	1.0	0.14%	21.2	0.05%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-1.243e+00	0.5338	50.0	6.76%	2858.7	6.21%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-1.225e+00	0.5400	25.0	3.38%	1375.9	2.99%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-1.210e+00	0.5453	16.0	2.16%	851.1	1.85%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-1.207e+00	0.5453	9.0	1.22%	449.9	0.98%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-1.206e+00	0.5453	13.0	1.76%	678.4	1.47%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-1.204e+00	0.5453	4.0	0.54%	173.0	0.38%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-1.174e+00	0.5543	18.0	2.43%	975.9	2.12%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-1.148e+00	0.5659	3.0	0.41%	123.7	0.27%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-1.141e+00	0.5672	15.0	2.03%	806.1	1.75%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-1.107e+00	0.5839	11.0	1.49%	579.9	1.26%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-1.099e+00	0.5858	8.0	1.08%	407.9	0.89%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-1.093e+00	0.5864	35.0	4.73%	2007.8	4.36%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-1.082e+00	0.5905	18.0	2.43%	995.7	2.16%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-1.064e+00	0.5980	10.0	1.35%	528.1	1.15%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-9.950e-01	0.6378	6.0	0.81%	306.4	0.67%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-9.864e-01	0.6403	21.0	2.84%	1197.2	2.60%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-9.842e-01	0.6403	24.0	3.24%	1378.1	2.99%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-9.556e-01	0.6542	26.0	3.51%	1507.4	3.27%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-9.351e-01	0.6646	1.0	0.14%	31.0	0.07%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-9.200e-01	0.6716	29.0	3.92%	1700.1	3.69%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-8.965e-01	0.6844	3.0	0.41%	144.9	0.31%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-8.759e-01	0.6954	3.0	0.41%	146.7	0.32%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-8.630e-01	0.7012	48.0	6.49%	2883.3	6.26%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-8.486e-01	0.7082	84.0	11.35%	5106.7	11.09%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-8.403e-01	0.7108	61.0	8.24%	3693.5	8.02%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-8.290e-01	0.7157	4.0	0.54%	210.9	0.46%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-8.165e-01	0.7214	9.0	1.22%	513.6	1.12%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-8.074e-01	0.7248	2.0	0.27%	94.5	0.21%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-7.988e-01	0.7278	5.0	0.68%	274.3	0.60%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-7.801e-01	0.7382	3.0	0.41%	156.5	0.34%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-7.737e-01	0.7397	94.0	12.70%	5770.4	12.53%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-7.722e-01	0.7397	2.0	0.27%	97.6	0.21%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-7.705e-01	0.7397	27.0	3.65%	1629.5	3.54%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-7.650e-01	0.7397	27.0	3.65%	1631.1	3.54%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-7.586e-01	0.7397	5.0	0.68%	280.2	0.61%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-7.567e-01	0.7397	71.0	9.59%	4356.7	9.46%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-7.506e-01	0.7397	49.0	6.62%	2997.3	6.51%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-7.266e-01	0.7522	35.0	4.73%	2141.4	4.65%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-6.788e-01	0.7857	8.0	1.08%	480.9	1.04%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-6.591e-01	0.7979	6.0	0.81%	359.2	0.78%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-6.486e-01	0.8029	1.0	0.14%	46.6	0.10%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-6.409e-01	0.8058	21.0	2.84%	1304.2	2.83%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-6.218e-01	0.8178	16.0	2.16%	997.8	2.17%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-6.062e-01	0.8272	3.0	0.41%	178.4	0.39%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-5.698e-01	0.8544	2.0	0.27%	118.5	0.26%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-5.646e-01	0.8553	8.0	1.08%	507.8	1.10%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-5.624e-01	0.8553	44.0	5.95%	2786.8	6.05%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-5.553e-01	0.8561	48.0	6.49%	3042.5	6.61%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-5.534e-01	0.8561	3.0	0.41%	187.0	0.41%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-5.534e-01	0.8561	3.0	0.41%	186.2	0.40%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-5.501e-01	0.8561	9.0	1.22%	575.4	1.25%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-5.440e-01	0.8561	1.0	0.14%	54.6	0.12%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-5.381e-01	0.8561	21.0	2.84%	1345.4	2.92%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-5.366e-01	0.8561	17.0	2.30%	1091.6	2.37%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-5.187e-01	0.8633	9.0	1.22%	584.1	1.27%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-5.090e-01	0.8683	34.0	4.59%	2185.8	4.75%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-4.986e-01	0.8738	4.0	0.54%	262.2	0.57%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-4.867e-01	0.8808	5.0	0.68%	331.2	0.72%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-4.678e-01	0.8941	2.0	0.27%	132.2	0.29%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-4.614e-01	0.8963	7.0	0.95%	470.8	1.02%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-4.595e-01	0.8963	25.0	3.38%	1638.5	3.56%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-4.476e-01	0.9017	12.0	1.62%	803.3	1.74%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e0	-4.420e-01	0.9034	49.0	6.62%	3182.5	6.91%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-4.355e-01	0.9057	25.0	3.38%	1651.8	3.59%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-4.350e-01	0.9057	6.0	0.81%	411.0	0.89%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-4.339e-01	0.9057	5.0	0.68%	344.1	0.75%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-4.049e-01	0.9232	11.0	1.49%	754.5	1.64%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-3.960e-01	0.9279	2.0	0.27%	144.6	0.31%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-3.893e-01	0.9307	40.0	5.41%	2646.2	5.75%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-3.848e-01	0.9313	3.0	0.41%	218.6	0.47%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-3.830e-01	0.9313	11.0	1.49%	763.7	1.66%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-3.687e-01	0.9394	53.0	7.16%	3497.9	7.60%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-3.655e-01	0.9394	61.0	8.24%	4012.6	8.72%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-3.619e-01	0.9394	7.0	0.95%	502.0	1.09%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-3.596e-01	0.9394	2.0	0.27%	151.7	0.33%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-3.562e-01	0.9394	9.0	1.22%	640.0	1.39%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-3.493e-01	0.9402	55.0	7.43%	3643.1	7.91%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-3.451e-01	0.9407	2.0	0.27%	154.0	0.33%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-3.451e-01	0.9407	80.0	10.81%	5246.3	11.40%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-3.404e-01	0.9407	2.0	0.27%	156.0	0.34%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-3.356e-01	0.9407	1.0	0.14%	78.5	0.17%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-3.353e-01	0.9407	24.0	3.24%	1647.3	3.58%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-3.300e-01	0.9407	19.0	2.57%	1321.3	2.87%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-3.296e-01	0.9407	55.0	7.43%	3662.7	7.96%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-3.188e-01	0.9417	17.0	2.30%	1195.6	2.60%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-3.101e-01	0.9467	3.0	0.41%	237.3	0.52%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-3.054e-01	0.9477	128.0	17.30%	8349.5	18.14%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-3.034e-01	0.9477	12.0	1.62%	868.7	1.89%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-2.961e-01	0.9499	18.0	2.43%	1276.3	2.77%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-2.612e-01	0.9802	4.0	0.54%	327.7	0.71%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-2.591e-01	0.9802	2.0	0.27%	175.2	0.38%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-2.537e-01	0.9807	17.0	2.30%	1238.6	2.69%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-2.433e-01	0.9875	14.0	1.89%	1041.2	2.26%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-2.381e-01	0.9893	23.0	3.11%	1655.7	3.60%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-2.325e-01	0.9914	2.0	0.27%	183.9	0.40%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-2.303e-01	0.9914	37.0	5.00%	2594.4	5.64%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-2.273e-01	0.9914	1.0	0.14%	99.7	0.22%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-2.143e-01	0.9992	2.0	0.27%	189.3	0.41%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-2.040e-01	1.0000	157.0	21.22%	10372.2	22.53%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-2.027e-01	1.0000	19.0	2.57%	1417.0	3.08%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-2.005e-01	1.0000	31.0	4.19%	2229.8	4.84%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-2.005e-01	1.0000	79.0	10.68%	5379.4	11.69%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-1.907e-01	1.0000	6.0	0.81%	509.9	1.11%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e0	-1.850e-01	1.0000	27.0	3.65%	1978.3	4.30%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-1.835e-01	1.0000	30.0	4.05%	2182.1	4.74%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-1.822e-01	1.0000	2.0	0.27%	201.4	0.44%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-1.679e-01	1.0000	1.0	0.14%	116.9	0.25%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-1.653e-01	1.0000	43.0	5.81%	3077.2	6.68%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-1.635e-01	1.0000	2.0	0.27%	209.1	0.45%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-1.621e-01	1.0000	43.0	5.81%	3082.8	6.70%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-1.615e-01	1.0000	84.0	11.35%	5777.2	12.55%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-1.511e-01	1.0000	9.0	1.22%	759.0	1.65%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-1.500e-01	1.0000	21.0	2.84%	1610.6	3.50%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-1.411e-01	1.0000	1.0	0.14%	126.4	0.27%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-1.372e-01	1.0000	14.0	1.89%	1134.9	2.47%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-1.329e-01	1.0000	45.0	6.08%	3266.2	7.09%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-1.303e-01	1.0000	69.0	9.32%	4864.3	10.57%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-1.250e-01	1.0000	8.0	1.08%	709.6	1.54%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-1.169e-01	1.0000	26.0	3.51%	2004.0	4.35%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-1.158e-01	1.0000	6.0	0.81%	565.8	1.23%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-1.071e-01	1.0000	3.0	0.41%	329.8	0.72%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-9.901e-02	1.0000	14.0	1.89%	1184.0	2.57%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-8.641e-02	1.0000	5.0	0.68%	516.6	1.12%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-7.773e-02	1.0000	3.0	0.41%	356.4	0.77%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-7.512e-02	1.0000	5.0	0.68%	530.1	1.15%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-7.353e-02	1.0000	2.0	0.27%	268.3	0.58%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-7.078e-02	1.0000	6.0	0.81%	619.0	1.34%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-7.035e-02	1.0000	1.0	0.14%	167.6	0.36%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-6.865e-02	1.0000	61.0	8.24%	4509.7	9.80%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-6.329e-02	1.0000	2.0	0.27%	279.6	0.61%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-6.290e-02	1.0000	20.0	2.70%	1691.2	3.67%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-6.115e-02	1.0000	3.0	0.41%	376.3	0.82%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-6.042e-02	1.0000	23.0	3.11%	1914.2	4.16%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-5.696e-02	1.0000	76.0	10.27%	5564.8	12.09%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-5.390e-02	1.0000	1.0	0.14%	183.2	0.40%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-5.128e-02	1.0000	1.0	0.14%	186.1	0.40%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-4.684e-02	1.0000	2.0	0.27%	301.9	0.66%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-4.283e-02	1.0000	60.0	8.11%	4558.5	9.90%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-2.699e-02	1.0000	1.0	0.14%	225.9	0.49%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-2.699e-02	1.0000	1.0	0.14%	225.1	0.49%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-1.832e-02	1.0000	137.0	18.51%	9928.7	21.57%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-1.561e-02	1.0000	95.0	12.84%	7176.2	15.59%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-1.511e-02	1.0000	7.0	0.95%	861.7	1.87%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e0	-1.116e-02	1.0000	2.0	0.27%	404.3	0.88%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-8.194e-03	1.0000	14.0	1.89%	1515.3	3.29%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-7.942e-03	1.0000	2.0	0.27%	428.9	0.93%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	-6.774e-03	1.0000	40.0	5.41%	3521.8	7.65%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-2.602e-03	1.0000	20.0	2.70%	2140.5	4.65%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-1.715e-03	1.0000	4.0	0.54%	765.7	1.66%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-1.544e-03	1.0000	1.0	0.14%	401.5	0.87%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e0	-1.415e-03	1.0000	123.0	16.62%	9625.5	20.91%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-4.300e-04	1.0000	45.0	6.08%	4323.9	9.39%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-1.680e-04	1.0000	3.0	0.41%	823.3	1.79%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-2.000e-06	1.0000	4.0	0.54%	1257.2	2.73%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	0.000e+00	1.0000	0.0	0.00%	10.7	0.02%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	0.000e+00	1.0000	0.0	0.00%	34.6	0.08%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	0.000e+00	1.0000	0.0	0.00%	100.1	0.22%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	0.000e+00	1.0000	0.0	0.00%	17.4	0.04%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	0.000e+00	1.0000	0.0	0.00%	95.0	0.21%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	0.000e+00	1.0000	0.0	0.00%	129.4	0.28%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	0.000e+00	1.0000	0.0	0.00%	15.8	0.03%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	0.000e+00	1.0000	0.0	0.00%	64.6	0.14%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	0.000e+00	1.0000	0.0	0.00%	53.0	0.12%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	0.000e+00	1.0000	0.0	0.00%	178.0	0.39%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	4.9	0.01%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	0.000e+00	1.0000	0.0	0.00%	8.2	0.02%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	0.000e+00	1.0000	0.0	0.00%	38.9	0.08%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	0.000e+00	1.0000	0.0	0.00%	8.7	0.02%