Information for 9-CCTTCCCACTTGAGTT (Motif 23)

A G T C G T A C A C G T A C G T A G T C A G T C A G T C C G T A G T A C C G A T A C G T A C T G G C T A A C T G A C G T C G A T
Reverse Opposite:
C G T A G T C A A G T C C A G T G T A C C G T A C G T A A C T G A C G T A C T G A C T G C T A G C G T A C G T A A C T G A C T G
p-value:1e-8
log p-value:-1.858e+01
Information Content per bp:1.908
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif4.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets28.6 +/- 11.4bp
Average Position of motif in Background40.2 +/- 13.8bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NKX2-3/MA0672.1/Jaspar

Match Rank:1
Score:0.67
Offset:4
Orientation:forward strand
Alignment:CCTTCCCACTTGAGTT
----ACCACTTGAA--
 A G T C G T A C A C G T A C G T A G T C A G T C A G T C C G T A G T A C C G A T A C G T A C T G G C T A A C T G A C G T C G A T
A C G T A C G T A C G T A C G T T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A A C G T A C G T

NKX2-8/MA0673.1/Jaspar

Match Rank:2
Score:0.66
Offset:5
Orientation:forward strand
Alignment:CCTTCCCACTTGAGTT
-----CCACTTGAA--
 A G T C G T A C A C G T A C G T A G T C A G T C A G T C C G T A G T A C C G A T A C G T A C T G G C T A A C T G A C G T C G A T
A C G T A C G T A C G T A C G T A C G T T A G C G A T C G T C A G A T C A G C T G A C T T A C G G C T A T C G A A C G T A C G T

PH0111.1_Nkx2-2/Jaspar

Match Rank:3
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CCTTCCCACTTGAGTT--
-ATAACCACTTGAAAATT
 A G T C G T A C A C G T A C G T A G T C A G T C A G T C C G T A G T A C C G A T A C G T A C T G G C T A A C T G A C G T C G A T A C G T A C G T
A C G T G C A T C G A T T C G A C T G A T A G C A G T C G C T A G T A C C G A T A G C T T C A G C G T A T C G A C G T A C G T A A C G T C G A T

PH0114.1_Nkx2-5/Jaspar

Match Rank:4
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CCTTCCCACTTGAGTT-
-TAAGCCACTTGAATTT
 A G T C G T A C A C G T A C G T A G T C A G T C A G T C C G T A G T A C C G A T A C G T A C T G G C T A A C T G A C G T C G A T A C G T
A C G T G A C T C T G A C T G A C A T G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T C G A G C A T G A C T A G C T

PH0171.1_Nkx2-1/Jaspar

Match Rank:5
Score:0.64
Offset:1
Orientation:forward strand
Alignment:CCTTCCCACTTGAGTT-
-TAAGCCACTTGAAATT
 A G T C G T A C A C G T A C G T A G T C A G T C A G T C C G T A G T A C C G A T A C G T A C T G G C T A A C T G A C G T C G A T A C G T
A C G T A G C T T C G A C T G A A T C G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G T C A G C A T G C A T

PH0113.1_Nkx2-4/Jaspar

Match Rank:6
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CCTTCCCACTTGAGTT-
-TAAGCCACTTGAAATT
 A G T C G T A C A C G T A C G T A G T C A G T C A G T C C G T A G T A C C G A T A C G T A C T G G C T A A C T G A C G T C G A T A C G T
A C G T G C A T C G T A C G T A C T A G T A G C G A T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G C T A G C A T G A C T

Pax6/MA0069.1/Jaspar

Match Rank:7
Score:0.61
Offset:2
Orientation:forward strand
Alignment:CCTTCCCACTTGAGTT
--TTCACGCATGAGTT
 A G T C G T A C A C G T A C G T A G T C A G T C A G T C C G T A G T A C C G A T A C G T A C T G G C T A A C T G A C G T C G A T
A C G T A C G T A C G T G A C T G A T C G T C A G A T C C A T G A T G C C G T A A G C T A T C G C T G A T A C G A G C T C A G T

PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer

Match Rank:8
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:CCTTCCCACTTGAGTT------
--TTTMCGCTTSABTGAACACN
 A G T C G T A C A C G T A C G T A G T C A G T C A G T C C G T A G T A C C G A T A C G T A C T G G C T A A C T G A C G T C G A T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A G C T C A G T G A C T T G A C G A T C T C A G A T G C G C A T A G C T T A C G C T G A A T C G G A C T C T A G T G C A T C G A A G T C G C T A A T G C T C G A

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:9
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:CCTTCCCACTTGAGTT
----NSCACTYVAV--
 A G T C G T A C A C G T A C G T A G T C A G T C A G T C C G T A G T A C C G A T A C G T A C T G G C T A A C T G A C G T C G A T
A C G T A C G T A C G T A C G T C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G A C G T A C G T

PH0115.1_Nkx2-6/Jaspar

Match Rank:10
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CCTTCCCACTTGAGTT-
-TAAGCCACTTAACATT
 A G T C G T A C A C G T A C G T A G T C A G T C A G T C C G T A G T A C C G A T A C G T A C T G G C T A A C T G A C G T C G A T A C G T
A C G T C A G T C T G A C T G A C A T G T A G C A G T C C G T A G T A C A C G T A G C T C T G A C G T A T G A C G C T A G A C T G A C T