Information for 11-AGCCAATCGC (Motif 9)

T C G A C T A G T A G C T G A C G C T A C T G A A C G T G T A C T A C G G T A C
Reverse Opposite:
C A T G A T G C C A T G T G C A G A C T C G A T A C T G A T C G G A T C A G C T
p-value:1e-11
log p-value:-2.739e+01
Information Content per bp:1.672
Number of Target Sequences with motif46.0
Percentage of Target Sequences with motif5.75%
Number of Background Sequences with motif793.6
Percentage of Background Sequences with motif1.67%
Average Position of motif in Targets55.5 +/- 25.7bp
Average Position of motif in Background49.3 +/- 30.1bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL004.1_CCAAT-box/Jaspar

Match Rank:1
Score:0.82
Offset:-3
Orientation:forward strand
Alignment:---AGCCAATCGC
ACTAGCCAATCA-
 A C G T A C G T A C G T T C G A C T A G T A G C T G A C G C T A C T G A A C G T G T A C T A C G G T A C
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T

NFY(CCAAT)/Promoter/Homer

Match Rank:2
Score:0.82
Offset:0
Orientation:forward strand
Alignment:AGCCAATCGC
AGCCAATCGG
 T C G A C T A G T A G C T G A C G C T A C T G A A C G T G T A C T A C G G T A C
T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

NFIC/MA0161.1/Jaspar

Match Rank:3
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:AGCCAATCGC
TGCCAA----
 T C G A C T A G T A G C T G A C G C T A C T G A A C G T G T A C T A C G G T A C
G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--AGCCAATCGC
CGTGCCAAG---
 A C G T A C G T T C G A C T A G T A G C T G A C G C T A C T G A A C G T G T A C T A C G G T A C
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T

NFYB/MA0502.1/Jaspar

Match Rank:5
Score:0.71
Offset:-5
Orientation:forward strand
Alignment:-----AGCCAATCGC
AAATGGACCAATCAG
 A C G T A C G T A C G T A C G T A C G T T C G A C T A G T A G C T G A C G C T A C T G A A C G T G T A C T A C G G T A C
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:6
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--AGCCAATCGC
BCAGACWA----
 A C G T A C G T T C G A C T A G T A G C T G A C G C T A C T G A A C G T G T A C T A C G G T A C
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:7
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-AGCCAATCGC
CAGCC------
 A C G T T C G A C T A G T A G C T G A C G C T A C T G A A C G T G T A C T A C G G T A C
T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:8
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--AGCCAATCGC
GGTGCCAAGT--
 A C G T A C G T T C G A C T A G T A G C T G A C G C T A C T G A A C G T G T A C T A C G G T A C
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T

NFYA/MA0060.2/Jaspar

Match Rank:9
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--AGCCAATCGC------
TGGACCAATCAGCACTCT
 A C G T A C G T T C G A C T A G T A G C T G A C G C T A C T G A A C G T G T A C T A C G G T A C A C G T A C G T A C G T A C G T A C G T A C G T
A G C T A T C G T C A G C T G A A T G C A G T C C G T A T C G A G A C T T A G C T C G A T C A G T G A C C T G A A T G C A C G T G T A C C G A T

PH0026.1_Duxbl/Jaspar

Match Rank:10
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--AGCCAATCGC-----
CGACCCAATCAACGGTG
 A C G T A C G T T C G A C T A G T A G C T G A C G C T A C T G A A C G T G T A C T A C G G T A C A C G T A C G T A C G T A C G T A C G T
A G T C C T A G C T G A A G T C A G T C A G T C G T C A G T C A A G C T A G T C C G T A C T G A A G T C T A C G T C A G G C A T T A C G