Information for 4-CTCAGGTCAA (Motif 7)

G A T C C A G T A G T C C G T A A T C G C A T G A C G T A G T C C G T A T G C A
Reverse Opposite:
A C G T A C G T A C T G C G T A G T A C T A G C C G A T C T A G G T C A C T A G
p-value:1e-11
log p-value:-2.547e+01
Information Content per bp:1.828
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif2.56%
Number of Background Sequences with motif71.5
Percentage of Background Sequences with motif0.27%
Average Position of motif in Targets55.9 +/- 15.6bp
Average Position of motif in Background50.1 +/- 30.6bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:1
Score:0.78
Offset:1
Orientation:forward strand
Alignment:CTCAGGTCAA
-TRAGGTCA-
 G A T C C A G T A G T C C G T A A T C G C A T G A C G T A G T C C G T A T G C A
A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:2
Score:0.76
Offset:3
Orientation:forward strand
Alignment:CTCAGGTCAA
---AGGTCA-
 G A T C C A G T A G T C C G T A A T C G C A T G A C G T A G T C C G T A T G C A
A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T

NR2F1/MA0017.2/Jaspar

Match Rank:3
Score:0.73
Offset:0
Orientation:forward strand
Alignment:CTCAGGTCAA---
CAAAGGTCAAGGG
 G A T C C A G T A G T C C G T A A T C G C A T G A C G T A G T C C G T A T G C A A C G T A C G T A C G T
G T A C G C T A C T G A C T G A A T C G A C T G A C G T A G T C C T G A G T C A T C A G T C A G C T A G

NR4A2/MA0160.1/Jaspar

Match Rank:4
Score:0.71
Offset:2
Orientation:forward strand
Alignment:CTCAGGTCAA
--AAGGTCAC
 G A T C C A G T A G T C C G T A A T C G C A T G A C G T A G T C C G T A T G C A
A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:5
Score:0.70
Offset:3
Orientation:forward strand
Alignment:CTCAGGTCAA-----
---AGGTCAAGGTCA
 G A T C C A G T A G T C C G T A A T C G C A T G A C G T A G T C C G T A T G C A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.68
Offset:0
Orientation:forward strand
Alignment:CTCAGGTCAA
CAAAGGTCAG
 G A T C C A G T A G T C C G T A A T C G C A T G A C G T A G T C C G T A T G C A
A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:7
Score:0.68
Offset:1
Orientation:forward strand
Alignment:CTCAGGTCAA
-AGRGGTCA-
 G A T C C A G T A G T C C G T A A T C G C A T G A C G T A G T C C G T A T G C A
A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T

RORA/MA0071.1/Jaspar

Match Rank:8
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-CTCAGGTCAA
ATCAAGGTCA-
 A C G T G A T C C A G T A G T C C G T A A T C G C A T G A C G T A G T C C G T A T G C A
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:9
Score:0.67
Offset:3
Orientation:forward strand
Alignment:CTCAGGTCAA-----
---AGGTCAAGGTCA
 G A T C C A G T A G T C C G T A A T C G C A T G A C G T A G T C C G T A T G C A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A

PB0049.1_Nr2f2_1/Jaspar

Match Rank:10
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---CTCAGGTCAA---
TCTCAAAGGTCACGAG
 A C G T A C G T A C G T G A T C C A G T A G T C C G T A A T C G C A T G A C G T A G T C C G T A T G C A A C G T A C G T A C G T
C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G