Information for 1-GGTCAVSSTGACCTDG (Motif 1)

C A T G A C T G C A G T A G T C C G T A T A G C A T C G T A G C G C A T T A C G T G C A A G T C G T A C A G C T C T G A T A C G
Reverse Opposite:
A T G C G A C T T C G A C A T G T A C G A C G T A T G C C G T A A T C G T A G C A T C G C G A T A C T G G T C A A G T C G T A C
p-value:1e-57
log p-value:-1.325e+02
Information Content per bp:1.623
Number of Target Sequences with motif49.0
Percentage of Target Sequences with motif7.38%
Number of Background Sequences with motif54.5
Percentage of Background Sequences with motif0.21%
Average Position of motif in Targets53.2 +/- 21.6bp
Average Position of motif in Background52.1 +/- 29.8bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.96
Offset:0
Orientation:reverse strand
Alignment:GGTCAVSSTGACCTDG
GGTCANNGTGACCTN-
 C A T G A C T G C A G T A G T C C G T A T A G C A T C G T A G C G C A T T A C G T G C A A G T C G T A C A G C T C T G A T A C G
C A T G C T A G C A G T A G T C C G T A A T G C T A C G T A C G G C A T T C A G G T C A G A T C G T A C G A C T A C G T A C G T

ESR2/MA0258.2/Jaspar

Match Rank:2
Score:0.92
Offset:-1
Orientation:reverse strand
Alignment:-GGTCAVSSTGACCTDG
AGGNCANNGTGACCT--
 A C G T C A T G A C T G C A G T A G T C C G T A T A G C A T C G T A G C G C A T T A C G T G C A A G T C G T A C A G C T C T G A T A C G
C T G A C T A G C T A G C A G T A G T C C G T A A T C G A C T G T A C G G C A T T A C G T G C A G A T C G T A C G A C T A C G T A C G T

ESR1/MA0112.3/Jaspar

Match Rank:3
Score:0.89
Offset:-2
Orientation:forward strand
Alignment:--GGTCAVSSTGACCTDG
AAGGTCACGGTGACCTG-
 A C G T A C G T C A T G A C T G C A G T A G T C C G T A T A G C A T C G T A G C G C A T T A C G T G C A A G T C G T A C A G C T C T G A T A C G
C T G A T C G A A C T G C T A G A C G T G A T C C T G A T G A C T A C G T C A G A G C T C T A G T C G A A T G C G T A C A G C T A C T G A C G T

PPARG/MA0066.1/Jaspar

Match Rank:4
Score:0.83
Offset:-4
Orientation:reverse strand
Alignment:----GGTCAVSSTGACCTDG
AGTAGGTCACNGTGACCTAC
 A C G T A C G T A C G T A C G T C A T G A C T G C A G T A G T C C G T A T A G C A T C G T A G C G C A T T A C G T G C A A G T C G T A C A G C T C T G A T A C G
G C T A A T C G C A G T C T G A C T A G A C T G C A G T A T G C G T C A G A T C T A G C A C T G C A G T A T C G T G C A G A T C A T G C A G C T C G T A A T G C

Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer

Match Rank:5
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:GGTCAVSSTGACCTDG
TGACCCAGTGACCTAC
 C A T G A C T G C A G T A G T C C G T A T A G C A T C G T A G C G C A T T A C G T G C A A G T C G T A C A G C T C T G A T A C G
G C A T T A C G G C T A A T G C G T A C A G T C T G C A T A C G C G A T C A T G T G C A T G A C G A T C G A C T T C G A T A G C

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:6
Score:0.65
Offset:8
Orientation:reverse strand
Alignment:GGTCAVSSTGACCTDG
--------TGACCT--
 C A T G A C T G C A G T A G T C C G T A T A G C A T C G T A G C G C A T T A C G T G C A A G T C G T A C A G C T C T G A T A C G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:7
Score:0.63
Offset:8
Orientation:reverse strand
Alignment:GGTCAVSSTGACCTDG--
--------TGACCTTGAT
 C A T G A C T G C A G T A G T C C G T A T A G C A T C G T A G C G C A T T A C G T G C A A G T C G T A C A G C T C T G A T A C G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T

PB0153.1_Nr2f2_2/Jaspar

Match Rank:8
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:GGTCAVSSTGACCTDG----
----NNNNTGACCCGGCGCG
 C A T G A C T G C A G T A G T C C G T A T A G C A T C G T A G C G C A T T A C G T G C A A G T C G T A C A G C T C T G A T A C G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T T C G A T A G C A T C G A G C T T C A G G T C A G T A C G T A C A G T C T A C G T C A G G T A C A C T G G T A C A C T G

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:9
Score:0.62
Offset:8
Orientation:reverse strand
Alignment:GGTCAVSSTGACCTDG
--------TGACCTYA
 C A T G A C T G C A G T A G T C C G T A T A G C A T C G T A G C G C A T T A C G T G C A A G T C G T A C A G C T C T G A T A C G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A

ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:10
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GGTCAVSSTGACCTDG
NAGAACAGNCTGTNCT--
 A C G T A C G T C A T G A C T G C A G T A G T C C G T A T A G C A T C G T A G C G C A T T A C G T G C A A G T C G T A C A G C T C T G A T A C G
T C G A C T G A C T A G T C G A C G T A A T G C C G T A A T C G G C A T T A G C G C A T A T C G G C A T A G C T G A T C G A C T A C G T A C G T