Information for 17-ACTATAAAGC (Motif 26)

C G T A A G T C A G C T C G T A C G A T C G T A C G T A C T G A A T C G A G T C
Reverse Opposite:
A C T G A T G C A G C T A C G T C G A T C G T A A C G T C T G A A C T G C G A T
p-value:1e-7
log p-value:-1.730e+01
Information Content per bp:1.850
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.66%
Number of Background Sequences with motif9.4
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets61.1 +/- 27.6bp
Average Position of motif in Background35.3 +/- 36.9bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:1
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-ACTATAAAGC-
NGYCATAAAWCH
 A C G T C G T A A G T C A G C T C G T A C G A T C G T A C G T A C T G A A T C G A G T C A C G T
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:2
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-ACTATAAAGC-
GGCCATAAATCA
 A C G T C G T A A G T C A G C T C G T A C G A T C G T A C G T A C T G A A T C G A G T C A C G T
C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A

CDX1/MA0878.1/Jaspar

Match Rank:3
Score:0.66
Offset:0
Orientation:forward strand
Alignment:ACTATAAAGC
GCAATAAAA-
 C G T A A G T C A G C T C G T A C G A T C G T A C G T A C T G A A T C G A G T C
T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A A C G T

Hoxc9/MA0485.1/Jaspar

Match Rank:4
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-ACTATAAAGC--
GGCCATAAATCAC
 A C G T C G T A A G T C A G C T C G T A C G A T C G T A C G T A C T G A A T C G A G T C A C G T A C G T
C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C

Hoxa9/MA0594.1/Jaspar

Match Rank:5
Score:0.65
Offset:0
Orientation:forward strand
Alignment:ACTATAAAGC-
GCCATAAATCA
 C G T A A G T C A G C T C G T A C G A T C G T A C G T A C T G A A T C G A G T C A C G T
T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A

PB0135.1_Hoxa3_2/Jaspar

Match Rank:6
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----ACTATAAAGC
AAAAACCATTAAGG
 A C G T A C G T A C G T A C G T C G T A A G T C A G C T C G T A C G A T C G T A C G T A C T G A A T C G A G T C
T C G A G T C A C T G A G C T A C G T A T G A C A G T C T G C A C G A T G C A T C G T A C T G A A T C G T C A G

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:7
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-ACTATAAAGC-
GGCCATAAATCA
 A C G T C G T A A G T C A G C T C G T A C G A T C G T A C G T A C T G A A T C G A G T C A C G T
C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A

HOXB13/MA0901.1/Jaspar

Match Rank:8
Score:0.65
Offset:0
Orientation:forward strand
Alignment:ACTATAAAGC
CCAATAAAAC
 C G T A A G T C A G C T C G T A C G A T C G T A C G T A C T G A A T C G A G T C
T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C

POL012.1_TATA-Box/Jaspar

Match Rank:9
Score:0.64
Offset:1
Orientation:forward strand
Alignment:ACTATAAAGC------
-GTATAAAAGGCGGGG
 C G T A A G T C A G C T C G T A C G A T C G T A C G T A C T G A A T C G A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

TBP/MA0108.2/Jaspar

Match Rank:10
Score:0.64
Offset:1
Orientation:forward strand
Alignment:ACTATAAAGC------
-GTATAAAAGGCGGGG
 C G T A A G T C A G C T C G T A C G A T C G T A C G T A C T G A A T C G A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G